Gene Avi_4375 details

Gene Information

• Locus tag: Avi_4375
• Symbol: pycA
• ID: 7387950
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3704337
• End bp: 3707798
• Gene Length: 3462 bp
• Protein Length: 1153 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643653020
• Product: pyruvate carboxylase
• Protein accession: YP_002551191
• Protein GI: 222150234
• COG category: [C] Energy production and conversion
• COG ID: [COG1038] Pyruvate carboxylase
• TIGRFAM ID: [TIGR01235] pyruvate carboxylase

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTCTATTT CCAAGATCCT AGTTGCCAAT CGCTCCGAAA TCGCCATCCG CGTGTTTCGG 
GCTGCCAATG AACTCGGCAT AAAAACGGTC GCCATCTGGG CTGAGGAGGA CAAGCTCTCC 
CTGCATCGCT TCAAGGCGGA CGAAAGCTAT CAGGTCGGTC GCGGCCCGCA TCTGAAGCGG 
GATCTCGGCC CGATCGAAAG CTATCTTTCC ATTGAGGAAA TCATCCGCGT CGCCAAACTG 
TCAGGCGCGG ACGCCATCCA TCCGGGCTAT GGCCTCCTGT CCGAAAGTCC TGAATTTGTC 
GATGCCTGTA ACGATGCAGG TCTGATTTTC ATCGGCCCGC GATCCGACAC GATGCGGCAA 
TTGGGCAACA AGGTCGCCGC CCGCAATCTG GCGGTCGAAG TCGGCGTTCC CGTGGTGCCA 
GCCACCGAAC CGCTGCCTGA TGACATGGAC ACCGTGGCCA AAATGGCGGG CGAGATCGGC 
TATCCGCTGA TGCTCAAGGC GTCCTGGGGC GGTGGCGGGC GCGGCATGCG GGTGATCCGC 
TCCGAAAGCG ATCTGGCGCG CGAAGTCACG GAAGCCAAGC GCGAGGCAAA GGCCGCCTTT 
GGCAAGGATG AAGTCTATCT GGAAAAGCTG GTGGAAAATG CCCGCCATGT CGAAAGCCAG 
ATCCTCGGCG ATACCCATGG CAATGCCGTG CATCTGTTCG AACGCGATTG CTCGGTGCAG 
CGCCGCAACC AGAAAGTCGT GGAACGGGCA CCCGCCCCCT ATCTTTCCGA GGAGCAGCGC 
CAGGAACTTG CCGCCTATTC GCTCAAAATT GCCAGAGCCA CCGGCTATAT CGGTGCCGGC 
ACCGTCGAAT ATCTGATGGA TGCCGATACC GGAAAATTCT ATTTCATCGA GGTCAACCCG 
CGCATCCAGG TCGAGCATAC CGTCACCGAA GTGGTGACCG GTATCGACAT CGTCAAGGCG 
CAGATCCATA TCCTCGAAGG CTTTGCGATC GGCACGCCGG AATCGGGCGT TCCCCGCCAA 
GAAGACATCC GCCTGCATGG CCATGCCCTG CAATGCCGGG TCACGACCGA GGACCCGGAG 
CATAATTTCA TTCCCGATTA CGGTCGCATC ACCGCCTATC GTTCGGCAGC GGGTTTCGGC 
ATCCGGCTCG ATGGCGGCAC CGCCTATACC GGGGCGATCA TCACTCGTTT CTATGATCCG 
CTGTTGGTGA AAGTGACAGC TGCTGGCGCT TCACCACAGG AAGCGATTAG CCGGATGGAT 
CGGGCGCTGC GCGAATTCCG TATCCGCGGT GTCGCCACCA ATCTCACCTT CCTGGAAGCG 
ATCATCGGAC ACCCGAAATT TCGCAATAAT ACCTATACGA CACGCTTTAT CGATACCACG 
CCGGAACTGT TCGCCCAGGT CAAGCGCCAG GACCGGGCAA CCAAGCTGCT GACCTATCTG 
GCCGACGTCA CCGTCAACGG CCACCCGGAA ACCAAGGGCC GTCCCAAGCC CTCGGACAAG 
GCGGCAAAGC CAGTCATTCC CTATATCGAT GCCGGTATCA CCGATGGCAC CAAGCAGAAG 
CTTGATGCGC TGGGGCCAAA GGGCTTTGCC GAGTGGATGC GCAACGAACC GCGTGTGCTG 
CTGACCGACA CGACCATGCG CGACGGCCAT CAATCGCTGC TGGCCACCCG GATGCGCACA 
AATGACATTG CCCGGATCGC CAGCGTCTAC GCCCGCGCCC TGCCCAATCT ACTCTCGCTG 
GAATGCTGGG GCGGCGCGAC CTTTGACGTG TCCATGCGGT TCCTGACGGA AGATCCGTGG 
GAGAGGCTGG CACTGATCCG CGAAGGCGCA CCCAACCTGC TGCTGCAAAT GCTGCTACGC 
GGCGCAAACG GTGTCGGCTA TACCAATTAC CCCGACAATG TCGTCAAATA TTTTGTCCGC 
CAAGCGGCAA AGGGCGGCAT CGACCTGTTC CGGGTGTTCG ATTGCCTGAA CTGGGTCGAT 
AATATGCGCG TCTCCATGGA TGCCGTGCAG GAAGAAAACA AGCTGTGCGA GGCCGCAATC 
TGCTATACCG GCGATCTCCT GAACAGCGCC CGACCGAAAT ACGACCTGAA ATATTATACG 
GCTCTCGCCG CCGAACTGGA AAAAGCAGGC GCCCATATCA TTGCCGTCAA GGACATGGCC 
GGGTTGCTCA AACCCGCTGC CGCGAAAGTC TTGTTCAAGG CGCTGCGTGA GGCGACCAGC 
CTGCCGATCC ATTTCCACAC CCATGACACA TCGGGTATTT CAGCCGCCAC TGTGCTGGCA 
GCCATTGATG CCGGTGTCGA TGCCGTGGAT GCCGCTATGG ATGCGCTGTC GGGCAATACG 
TCCCAGCCCT GCCTCGGCTC AATCGTCGAG GCTCTAGCCG GAACCGAGCG CGACCCAGGG 
CTCGATCCGG AATGGATCCG TCGCATTTCC TTCTATTGGG AAGCGGTCCG CGGCCAATAT 
GCGGCCTTCG AAAGCGACCT CAAAGGCCCG GCCTCCGAAG TCTATCTGCA TGAAATGCCA 
GGCGGCCAGT TCACCAACCT GAAGGAACAG GCCCGTTCGC TGGGGCTGGA AACCCGCTGG 
CACGAGGTGG CGCAGACCTA TGCCGACGTC AACCAGATGT TCGGCGACAT CGTCAAAGTC 
ACGCCCTCAT CCAAGGTGGT AGGCGATATG GCGCTGATGA TGGTGGCACA AGATCTGACG 
GTGGACGATG TCGAGAATCC GGATAAGGAC ATTGCCTTCC CCGATTCGGT CGTCTCGATG 
CTAAAGGGTG ATCTCGGCCA ACCACCCGGC GGCTGGCCGC AGAGCCTGCA AAAGAAGGCA 
TTGAAGGGCG AAAAGCCGTA TACGGCTGTG CCGGGCTCAC TTTTACCGCC CGCCGATCTT 
GATGCCGAAC GCAAGACCAT CGAGGACAAG CTGGAGCGCA GTGTCAGTGA TTTCGAATTC 
GCGTCCTACC TGATGTATCC GAAGGTGTTC ACCGATTTCG CCCTGGCCTC CGATACCTAT 
GGCCCGGTCT CGGTCCTGCC GACCCATTCC TATTTCTACG GCATGGGCGA TGGCGAGGAA 
TTGTTTGCCG AAATCGAAAA AGGCAAGACA CTTGTCATCG TCAATCAGGC AGCCAGTGCT 
CCCGATGCCC AGGGCCTGGT GACGATGTTT TTCGAGCTGA ACGGTCAGCC ACGCCGTATC 
AAGGTGCCGG ACCGCAGCCA TGGAGCCTCC GGGGCCGCCG CCCGCCGCAA GGCGGAGGCC 
GCCAATGCCG CACATATCGG CGCACCGATG CCTGGTGTCA TCTCGCGGGT CTTCGTCGCG 
GCCGGACAGG CCGTGAAAGC CGGAGACGTG CTGCTGTCCA TCGAAGCCAT GAAGATGGAA 
ACCGCGCTGC ATGCCGAACG CGATGGCAAG ATTGCCGAAG TGCTGGTGAA AGCCGGTGAC 
CAGATCGACG CCAAGGACCT GCTGATCGGC CTTGAGGCAT AA 

 

Protein sequence

MSISKILVAN RSEIAIRVFR AANELGIKTV AIWAEEDKLS LHRFKADESY QVGRGPHLKR 
DLGPIESYLS IEEIIRVAKL SGADAIHPGY GLLSESPEFV DACNDAGLIF IGPRSDTMRQ 
LGNKVAARNL AVEVGVPVVP ATEPLPDDMD TVAKMAGEIG YPLMLKASWG GGGRGMRVIR 
SESDLAREVT EAKREAKAAF GKDEVYLEKL VENARHVESQ ILGDTHGNAV HLFERDCSVQ 
RRNQKVVERA PAPYLSEEQR QELAAYSLKI ARATGYIGAG TVEYLMDADT GKFYFIEVNP 
RIQVEHTVTE VVTGIDIVKA QIHILEGFAI GTPESGVPRQ EDIRLHGHAL QCRVTTEDPE 
HNFIPDYGRI TAYRSAAGFG IRLDGGTAYT GAIITRFYDP LLVKVTAAGA SPQEAISRMD 
RALREFRIRG VATNLTFLEA IIGHPKFRNN TYTTRFIDTT PELFAQVKRQ DRATKLLTYL 
ADVTVNGHPE TKGRPKPSDK AAKPVIPYID AGITDGTKQK LDALGPKGFA EWMRNEPRVL 
LTDTTMRDGH QSLLATRMRT NDIARIASVY ARALPNLLSL ECWGGATFDV SMRFLTEDPW 
ERLALIREGA PNLLLQMLLR GANGVGYTNY PDNVVKYFVR QAAKGGIDLF RVFDCLNWVD 
NMRVSMDAVQ EENKLCEAAI CYTGDLLNSA RPKYDLKYYT ALAAELEKAG AHIIAVKDMA 
GLLKPAAAKV LFKALREATS LPIHFHTHDT SGISAATVLA AIDAGVDAVD AAMDALSGNT 
SQPCLGSIVE ALAGTERDPG LDPEWIRRIS FYWEAVRGQY AAFESDLKGP ASEVYLHEMP 
GGQFTNLKEQ ARSLGLETRW HEVAQTYADV NQMFGDIVKV TPSSKVVGDM ALMMVAQDLT 
VDDVENPDKD IAFPDSVVSM LKGDLGQPPG GWPQSLQKKA LKGEKPYTAV PGSLLPPADL 
DAERKTIEDK LERSVSDFEF ASYLMYPKVF TDFALASDTY GPVSVLPTHS YFYGMGDGEE 
LFAEIEKGKT LVIVNQAASA PDAQGLVTMF FELNGQPRRI KVPDRSHGAS GAAARRKAEA 
ANAAHIGAPM PGVISRVFVA AGQAVKAGDV LLSIEAMKME TALHAERDGK IAEVLVKAGD 
QIDAKDLLIG LEA