| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4368 |
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| Symbol | gdh |
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| ID | 7387944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3684738 |
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| End bp | 3689543 |
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| Gene Length | 4806 bp |
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| Protein Length | 1601 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643653014 |
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| Product | NAD-glutamate dehydrogenase |
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| Protein accession | YP_002551185 |
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| Protein GI | 222150228 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTTGCAG CAAAACGGGT AAAACGGGAC CAGCTCTTTG AGCTTGCCAG ATCCACAGCC
GGAGAAAACC AGCCCGGCCT CATCGATCCG GGCGCCCTTT TCGGACGCGC CAGCGATGAC
GATCTCCAGC ATTACGATGC CGCGATGCTT CGAGCTGCGG CCCTTCGCGC CAGCCAGGAC
CTGCAAGACT GGCAGGGCAA GGGAGCACAA GTGCGCATTT CCCCCGTCGA AGGCATCGCC
GCCGATGGCG CAAGCCTCAG CGTGCTGTCC ATCGTCGATC GCAACAAGCC GTTTCTCTAT
GATTCGGTCA TGGGCGAGGT CACAAGCCAG TTTCGTGATA TTCATCTCAC CATCCATCCG
ATTCTGGTCA AGGCGGAGGG CCGCTGGACA CTCGCCGACA CCCAGACCGA GACCAGCGAC
CGCGTGAGCT ATATCCAACT GCATCTGGCG CCCTTGAACG AGGATCAAGC CAAGGGCCTT
GCGGAACGGC TACAATCCGT CGTTGCCCAG GTCGGCACCG TTGCCAGTGA CTGGCAGCCG
ATGATCTCGC TGCTCGACAG CGTCATGGCC GAATTGACCG AGCAGTCCAA TGTCAAGCGC
AAGACAGAAC GATCCGAAGC CATCGCCTTT CTGGAATGGC TGCGCGACGA CAATTTCACC
TTCCTCGGCA TGCGCGAATA TCTTTATTCC GGTGATGGCG CGAACGCCAA GCTGGAGCGC
GACAAGGGCC GTGGACTAGG CATACTCTCC AATCCCGATG TTCTGGTGCT GCGCCAGGGC
CGCAATGCAG TGACGACAAC ACCGGAAATC CTGGCCTTCC TTCAGGGGCC GGATGACCTG
ATCGTCACCA AGGCCAATGT CAAATCCGTG GTGCATCGCC GCGCCTATAT GGATTACATC
GGCATCAAGC GCTTCGATGC TGCGGGCAAG GTTGTCGGGG AGTTGCGGGT CGTCGGCCTA
TTCACGGCCA CCGCCTATAC CCATTCCGTC AATCACATTC CCTTGCTGCG CGCCAAGGTC
GAAAAGGTTA CCGACCAGTT CAATTTCGAC CCTTTGAGCC ACTCCGGACG GATATTGCAG
AACACGCTGG AATCCTACCC ACGCGACGAC CTGTTCCAGA TCGATACCGA AACGCTTTCG
CGCTTCTGCG AGCAGATCAT GGATCTGAGC GAACGGCCAA GGGTGCGTGT GCTGCAACGG
ATCGACCATT TCGACCGGTT CGTCTCACTG CTGGTCTTCG TGCCGCGTGA GGAATATAAT
TCACTGGTGC GCGAGAAGAT CGGCGACTAT TTCACCAAGG TCTACGATGG CCGCCTCTCG
GCATATTATC CGGCTTTCCC GGAAGGTGGC GTGGCGCGAG TGCATTTCAT CATCGGCCGT
TCGGAAGGCA AGACACCGCG CATCGCCCAG AACAAACTGG AAGAGGCAGT CAAGGCCATT
ACCGCCCGAT GGGATGACCG CTTCGCCAGC CTTGCTCCGC CGAAATCGCC GCAACTGGTC
GTCAGCCGCG CTTTCGAGGA TGCGTTTTCA CCGGAAGAGA CTGTCGCCGA TCTCAGCCAT
ATCCAGACCT GCCTGTCCGG CGCGAAAGCC TCTATCGCCT TCCACAATCG CCAGACGGCG
GAAGGCCAGA CGCTTTATCT CAAGGTGTTC CACGCCGGTC ATCACCTGCC ACTGTCGCGG
CGCGTGCCGC TGCTTGAAAA TCTCGGCTTC AGCGTCGTCA GCGAACGAAC CTTTGACATC
ACGGTCAAAG GCAGTGGCGA AACCGCTGGC AAGACCGGAG ATCAGCTGGT CGTTCTGCAT
GACATGGAAC TGGCGGTTCG CGCTGGCCAG GATTTCGACA TTGCCCGGCA TGGCGCCCGC
GTCGAGGCCA CGTTCCTTGC CGTCTTCAAC GGCGTGGTCG ACAACGATGC CTTCAACCGG
TTGGTGTTGA GCACTGGGCT GAGTGTCGGC GAAGTGGCTG TTCTGCGCGC CTATGCGGCC
TATCTGCGCC AGGCGGGCCT GGTCTATTCC CTCACCTATA TTGCCGAAAC ACTGAACAAA
TATCCTGAGA TCACCGCCGA TCTCTTCACC CTGTTCCACC AGTCTTTCGA TCCGAAGCTT
TCTGAAAAAT CGCGTCCGCG CAAACTGGCG GAACTGCGTG ACGGCATCGA GACGGCACTC
GCCTCCGTGC CGAGCCTGGA TGAGGACCGT ATCCTGCGGC GTTACCAGAA CGCAGTGGAT
TCGACCCTGC GCACCAATTA TTTCCAGAAA AGCCTCTCTT CGCAGAAAAA CAGCAGCAGC
AATGTCAAGC CAATGCTGGC TTTCAAATTC GATCCACAGC AACTGGACGG CCTGCCGCAA
CCGCGCCCGT TCCGGGAAAT GTTTGTCTAT GGGGTGGAGG TCGAGGGCGT GCATCTGCGC
TTCGGCAAGG TTGCCCGTGG CGGCTTGCGT TGGTCGGACC GCGCCCAGGA CTATCGCACC
GAAGTGCTCG GTCTCGTCAA GGCGCAGCAG GTGAAGAATG CGGTGATCGT GCCTGTCGGC
GCCAAGGGCG GCTTCTTTCC CAGGCAATTG CCAAGCCCCG CCAACCGGGA AGACTACCTG
CGGATGGGCC GGGAAGCCTA TATGACCTAT ATCCGCACGC TGCTGTCGAT CACCGATAAT
ATCAAGGATG GCGCGGTCGT CGCTCCCGCC GATACGGTGC GGCTGGATGG AGACGATCCC
TATTTCGTCG TCGCCGCCGA TAAAGGCACG GCAACCTTTT CCGATACGGC CAACGGTCTG
GCCCGCGAGG CCGGCTTCTG GCTGGACGAC GCTTTCGCGT CCGGCGGTTC CGCCGGTTAT
GACCACAAGA AAATGGGCAT CACCGCTCGC GGTGCCTGGG AAGCTGCCAA GCGACATTTC
CGCGAAATGG GTGTCGATAT CCAAAAGACA CCCTTCACGG TCGCAGGCGT TGGTGACATG
TCGGGCGACG TGTTCGGCAA TGGCATGCTG CTGTCACGCA AGATCCGGCT GATCGGCGCC
TTCGACCACC GGGATATTTT CATCGACCCC GATCCGGACA TGGAAAAATC CTTCCAGGAA
CGCAAGCGGA TGTTCGGCCT CGCCCGCTCC AGCTGGCAGG ATTACGATAA GACGCTGCTA
TCCAAAGGCG GGATGATCAT TTCACGGACG GAAAAGTCCG TCACTCTGAC CCCGCAAGCC
GCCGAGGCAA TTGGCCTTGC CAAGAAAGTA GCGACACCGT TTGAAATCAT GACCGCGATC
CTGAAGGCGC CGGTCGATCT GTTGTGGTTC GGCGGTATCG GCACCTATAT CAAGGCGCTT
TCGGAAACCC ATGCCGAGGT CGGCGATCGT GCGAACGACC CGATCCGCAT TACGGCGGAC
GAGGTCGGCG CCAAGGTGAT CGGCGAAGGT GCCAATCTCG GCGTCACCCA GAAGGGCCGC
ATCGCCTTTT CGCTGAAGGG CGGACGCTGC AATTCCGACG CCATCGACAA TTCGGCGGGC
GTCAATTCCT CCGACGTCGA GGTCAATATC AAGATTGCCC TGTCAACGGC GGTATCAAGC
GGCCGCCTCG ATCTCCCGGC CCGCAACAAA CTGCTCGCCT CGATGACCGA GGAGGTCGGC
GAGCTGGTGC TGCGCAACAA CTACCTCCAA TCCCTGGCGA TTTCGCTGGT GGCACGCCAG
GGCAGCGGTA ATCGTGATGA GCTATCGCGA CTGATGACCG TATTAGAGGC TTCTGGCAGG
CTGAACCGCA AGGTGGAAAC CCTGCCGGAT GATGCGGCGC TGGCCGAGCG CTATGCAGGC
GGTCAATCCC TGACCCGCCC GGAAATCGGC GTGCTTCTGT CCTATGCCAA GATCTCGCTG
TTCGATGATC TGGTCGAAAC CAGCCTGCCG GACGATCCCT ATTGCGCCAG CATTCTCAGC
AATTACTTCC CGAAGAAAAT GCGCAAGCCT TACGCCGATG ACATTGCCAC GCATCGGCTG
CATCGCGAAA TCATTGCGAC TGTGCTCGCC AACCACATCA TCAACCGTGG CGGCCCAGGC
TTCATGGCGT GGATGAGCGA CGCGACTGGC GGTACGGCCG AGGATATTGC CAGAGCCGCT
CTTCTGACCC GCGATGGGCT GGATCTGCGG GCCTATTGGG ACCGGATCGA CGCGCTGGAC
GGCGAAATTT CCGGCGAAGC GCAGAACGAT CTCTACCAGC GGGTCGCCAC GGTCTACCGC
GTCTTCACCA AACTGGCGAT TGATACACGG TTGGCCGCCG GTGACCTGTC GGATGTGGTG
CGCAAGTTGA AAAGCGCGAT CAAATCCTTC AAGGGCTTCA GCCGCTCGGT CACCCCAGCC
GATTTCTCGG CGCAGATCGG TGCCGAGGCC AGCGCCATGA CCGCTGCGGG CGTGCCGGAG
GATCTGGCCG AGGACCTCGC CGAATTGTGG AGCCTGACGG TCACCCCGGA AGTGATTTCC
GTCGCACTTC GGGCCGATGC CAGCCTGCAA AAGGCAACGG AAGGCTATTA CAAGGTCAGC
GAAATCTTCC GGATTGGCAG GCTGCTGTCC TCGGTCGAAA AAATTCCGAC CAGCGACCAT
TACGACAGCC TGGCCCGGCT GCGCAGCCTG GATCTGGTGC TGAAAGCACG ACGCAATATT
GTCGTCCAGG CGCTGACCCA GCACGGGGAC AGCCGCGATC CGGTTGCCGC CTGGCGGTCT
GCGGATGCAC TGCGGATCAA CAGGTTGGGC AGCGAGTTGA TCGCGCTCAC GGAAGGCGAT
CCGAGCTTGT CGCGCCTCAC CGTTGCCGCC AGCCTGCTGA CGGACATCGC CCAAGGCGCT
GCGTGA
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| Protein sequence | MVAAKRVKRD QLFELARSTA GENQPGLIDP GALFGRASDD DLQHYDAAML RAAALRASQD
LQDWQGKGAQ VRISPVEGIA ADGASLSVLS IVDRNKPFLY DSVMGEVTSQ FRDIHLTIHP
ILVKAEGRWT LADTQTETSD RVSYIQLHLA PLNEDQAKGL AERLQSVVAQ VGTVASDWQP
MISLLDSVMA ELTEQSNVKR KTERSEAIAF LEWLRDDNFT FLGMREYLYS GDGANAKLER
DKGRGLGILS NPDVLVLRQG RNAVTTTPEI LAFLQGPDDL IVTKANVKSV VHRRAYMDYI
GIKRFDAAGK VVGELRVVGL FTATAYTHSV NHIPLLRAKV EKVTDQFNFD PLSHSGRILQ
NTLESYPRDD LFQIDTETLS RFCEQIMDLS ERPRVRVLQR IDHFDRFVSL LVFVPREEYN
SLVREKIGDY FTKVYDGRLS AYYPAFPEGG VARVHFIIGR SEGKTPRIAQ NKLEEAVKAI
TARWDDRFAS LAPPKSPQLV VSRAFEDAFS PEETVADLSH IQTCLSGAKA SIAFHNRQTA
EGQTLYLKVF HAGHHLPLSR RVPLLENLGF SVVSERTFDI TVKGSGETAG KTGDQLVVLH
DMELAVRAGQ DFDIARHGAR VEATFLAVFN GVVDNDAFNR LVLSTGLSVG EVAVLRAYAA
YLRQAGLVYS LTYIAETLNK YPEITADLFT LFHQSFDPKL SEKSRPRKLA ELRDGIETAL
ASVPSLDEDR ILRRYQNAVD STLRTNYFQK SLSSQKNSSS NVKPMLAFKF DPQQLDGLPQ
PRPFREMFVY GVEVEGVHLR FGKVARGGLR WSDRAQDYRT EVLGLVKAQQ VKNAVIVPVG
AKGGFFPRQL PSPANREDYL RMGREAYMTY IRTLLSITDN IKDGAVVAPA DTVRLDGDDP
YFVVAADKGT ATFSDTANGL AREAGFWLDD AFASGGSAGY DHKKMGITAR GAWEAAKRHF
REMGVDIQKT PFTVAGVGDM SGDVFGNGML LSRKIRLIGA FDHRDIFIDP DPDMEKSFQE
RKRMFGLARS SWQDYDKTLL SKGGMIISRT EKSVTLTPQA AEAIGLAKKV ATPFEIMTAI
LKAPVDLLWF GGIGTYIKAL SETHAEVGDR ANDPIRITAD EVGAKVIGEG ANLGVTQKGR
IAFSLKGGRC NSDAIDNSAG VNSSDVEVNI KIALSTAVSS GRLDLPARNK LLASMTEEVG
ELVLRNNYLQ SLAISLVARQ GSGNRDELSR LMTVLEASGR LNRKVETLPD DAALAERYAG
GQSLTRPEIG VLLSYAKISL FDDLVETSLP DDPYCASILS NYFPKKMRKP YADDIATHRL
HREIIATVLA NHIINRGGPG FMAWMSDATG GTAEDIARAA LLTRDGLDLR AYWDRIDALD
GEISGEAQND LYQRVATVYR VFTKLAIDTR LAAGDLSDVV RKLKSAIKSF KGFSRSVTPA
DFSAQIGAEA SAMTAAGVPE DLAEDLAELW SLTVTPEVIS VALRADASLQ KATEGYYKVS
EIFRIGRLLS SVEKIPTSDH YDSLARLRSL DLVLKARRNI VVQALTQHGD SRDPVAAWRS
ADALRINRLG SELIALTEGD PSLSRLTVAA SLLTDIAQGA A
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