Gene Avi_4352 details

Gene Information

• Locus tag: Avi_4352
• ID: 7387930
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3668926
• End bp: 3669597
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643653000
• Product: transcriptional regulator CarD family
• Protein accession: YP_002551171
• Protein GI: 222150214
• COG category: [K] Transcription
• COG ID: [COG1329] Transcriptional regulators, similar to M. xanthus CarD

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTGGATCAGC ATGGAGTCAC CCGACGGTTC CCCCGTCTCA TCCGGGTCTT TCGGCCTGGG 
GTCGGCTGTC GCCGATACAG TAACAGGGAG TTTTTAGAGC GAATGACGAC CCAGCAGAAA 
AAATCCTCGA CGCGTCAGGG CTTCAAGACA GGTGAGGCGA TCGTTTATCC GGCCCATGGC 
GTCGGTACGA TTACCGCCAT TGAAGAGCAG GAAGTCGCGG GCATGAAGCT TGAGCTTTTT 
GTAATCGATT TCGATAAAGA TAAAATGCGT TTGAAAGTGC CGGTCACCAA GGCTGTCACC 
ATCGGAATGC GCAAGCTTTC GGAAACCGAT TTTGTTGATC GGGCTTTGAA AGTCGTTCAG 
GGCAAGGCAC GTGTCAAGCG GACCATGTGG TCACGCCGGG CACAGGAATA TGATGCGAAA 
ATCAATTCCG GCGACCTGAT TTCCATTGCC GAAGTGGTGC GCGACCTTTT CCGTGCCGAA 
CACCAGCCGG AACAGTCCTA TTCCGAGCGT CAGCTCTATG AAGCCGCACT GGATCGCATG 
GCGCGTGAAA TCGCCGCCGT CAACAAGATG TCTGAAACCG AAGCCGTCCG GCTGGTGGAA 
GTCAATCTTG CCAAAGGCCC GAAGCGCGGC AAGTCCGTGG AAGAAGACGA AACTCAGGAA 
GAAGCAGCGT AA 

 

Protein sequence

MDQHGVTRRF PRLIRVFRPG VGCRRYSNRE FLERMTTQQK KSSTRQGFKT GEAIVYPAHG 
VGTITAIEEQ EVAGMKLELF VIDFDKDKMR LKVPVTKAVT IGMRKLSETD FVDRALKVVQ 
GKARVKRTMW SRRAQEYDAK INSGDLISIA EVVRDLFRAE HQPEQSYSER QLYEAALDRM 
AREIAAVNKM SETEAVRLVE VNLAKGPKRG KSVEEDETQE EAA