| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4347 |
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| Symbol | mgpS |
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| ID | 7387927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3664054 |
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| End bp | 3667197 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652997 |
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| Product | ATP-dependent helicase |
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| Protein accession | YP_002551168 |
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| Protein GI | 222150211 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.755222 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCTGA GCGGCCGCAG CGTGATTGCT GTGCTGGGGC CGACCAATAC GGGCAAGACC
CATTATGCCA TCGAGCGCAT GGTTGCCCAT GGGTCAGGTA TGATCGGCCT GCCTTTACGG
CTGCTGGCGC GCGAAGTTTA CACCAGGCTG GTCGAGCGGG TCGGCGCGGC GCATGTCGCC
CTCATCACGG GCGAGGAAAA GATCACCCCG CCCAATACAC GGTTTTCTGT CTGCACCGTC
GAAGCGCTGC CGCGCGAGAC CAAAGTCGCG TTCGTGGCCA TTGATGAAAT CCAGTTGGCG
GGCGATCTCG AGCGCGGCCA TATTTTTACC GACCGGCTTT TGCATCTGCG CGGACGCGAG
GAAACCCTGT TGCTAGGCTC GGCGACCATG AAGCCGATCC TTCAGCATCT TCTGCCGGGT
ATTACTGTCG TTGAGCGTCC ACGCCTGTCG CAGCTGTTTT ATGCTGGCGA AAAGAAGATC
ACCCGGCTGC CGCAGCGCAC GGCAATCGTC GCCTTCTCCG CCGACGAGGT GTATTCCATT
GCCGAATTGA TCCGTCGCCA GCGCGGCGGG GCGGCTGTGG TGCTCGGCGC ACTCAGCCCG
CGCACCCGCA ATGCCCAGGT CGGCCTCTAT CAGTCCGGCG ATGTCGAATA TCTTGTGGCG
ACCGATGCGA TCGGCATGGG CCTGAACCTC GATGTCGATC ATGTTGCCTT TGCCCAGGAC
CGCAAGTTCG ATGGCTATCA GTTCCGCAAT CTCAATCCCG GAGAACTGGG CCAGATTGCC
GGGCGCGCCG GACGCCATCT GAAAGATGGC ACGTTCGGCG TCACAGGACG GGTCGATCCC
TTTGAGCCGG AACTGGTGGA ACGGTTGCAA AGCCATCATT TCGATCCGGT CAAGGTGCTG
CAATGGCGCA CCGCCCAATT CGATTTTTCC TCGATTGCCA ACCTGCGCCG CAGCCTCGAT
GCCGCCCCTA AGGTGGCGGG ACTGGTGCGG GCGCTGCCAG CAATCGATCA GCAGGCGCTA
GATTATCTGG CCCGCTATCC GGAAGTCCAG GACCTTGCTT CGTCGCCAAA TCGCGTCTCG
CTGCTGTGGG ATGCCTGCGC ATTACCGGAT TATCGGCGAA TTACCCCGGC ACAACATGCC
GATCTGATTC TTACCCTCTA TTCCGACCTT GCCCGGCACG GTAGTGTGAA CGAAGATTTC
ATGGCAGAGC AGGTGCATCG CTCCGACCGG ACAGACGGCG AGATAGATAC TCTTTCTGCG
CGCATTGCGC AGATCCGAAC TTGGACGTAT GTGTCGAACC GGCCAGGTTG GCTTGCCGAT
CCGACACACT GGCAAGAAAA GACGCGGGAA ATCGAAGATC GATTGTCTGA CGCGTTACAT
GAAAGGTTGA CGAAACGCTT TGTTGATCGC AGGACATCTG TGCTTATGAA GCGCTTGAGA
GAGAATGGGA TGCTGGAAGC TGAAATCAGT GTGAACGGTG ATGTCTTCGT TGAGGGACAT
CACGTGGGCC AACTCTCCGG ATTCCGGTTT ACGCCGATCT CTGGAACCGA GGGGCCGGAC
GCCAAGGCGG TGCAAACTGC TGCCCAAAAG GCGCTTGGCC TGGAATTCGA AGCGCGGGCT
GCAAGATTGC ATGCTTCGGG CAATGGGGAT CTGGCGCTCA GTTCCGACGG TCTCGTCCGG
TGGCTGGGTG ATCCCGTCGC CCGGCTGACC GGCTCGGATC ACATCATGCG CCCCCGCATT
CTGCTGCTGG CGGACGAACC GCTGAGCGGC AATGCGCGCG AGCACGTCGT CGCCCGCATC
GAGCGCTTCG TCAATCATCA TATCTCGACC ATTCTGAAGC CACTCGACGA TCTGTCGCGG
GCCGAGGACT TGCAGGGCCT CTCCAAGGGA TTGGCCTTCC AGCTGGTGGA AGGGCTTGGA
ATTCTGTTCC GCCGCGACGT CACCGAAGAG GTCAAGTCGC TGGACCAGGA TGCACGCGCC
TCCATGCGCC GCTACGGCGT GCGCTTCGGC GCCTATCACA TCTTCATGCC AGCCCTGTTG
AAGCCAGCAC CGGCCGAGCT GATCACCCTG CTCTGGGCCT TGAAGAACGA TGGCCTGGAC
AAGCCAGGCT ATGGCGATCT CATTCCGGTT CTGGCCGCAG GCCGCACCTC AGTGGTGACT
GATCCGAGCT TTGAGCGCAA TTTCTATAAG CTGGCGGGCT TCCGCTTCCT GGGCAAGCGG
GCCGTGCGCA TCGATATTCT GGAGCGGTTG GCGGATCTGA TCCGTCCATT GTTGCAATGG
AAGCCGGGCA CCACGCCGCG CCCGGACGGG GCTTACGATG GCCGCCGCTT CACCACTACC
ACGGCCATGC TCTCCATCCT CGGTGCGACA CCCGATGACA TGGAAGAAAT CCTGAAAGGC
CTCGGCTACC GCGCCGATGC GGTCAAGGCA GAAGAGGCCC AGGCCTTCCT TGGCACCCAG
GATGACAAGC CTGCCGCAGC AGCTGCCAAT GCACCAACGC AGACAGCCGA AAGCGTCGAA
AAAACCGACG AAGACGATGC GGATCAGCAT GGTGAAGCCT CAGCGACGGA AACTGTCGCT
GCTGAACCGG CAGTGCTCGA GACCGTTCCA AATGCTGAGA TCAGCGCCGA AGCAACGACA
GAAGCATCGG CGGAGGTCAA AGAGGCCGAA GTTGCAGCGA CCGAGGCTCC ATCCGCTGAC
CTTCTTGCCA ATCCGGAAGG ACCAACCGAA CCCAAGCCGG TTCTGCTGTG GCGTCCTGGT
GGACGCAACG ACAACCAGCG CCAGGCCGGA CGTCCACAAC AGGGCGACCG CCGTCCGCAG
GGTGCAAAGC GCGCCCCGCA GCAGGGCGAG CAGAAGCCGG ACGCTCGTAC CGAAGGTGCC
CGTACAGAAG GTGGACGTGA CCGCGACGAC AAGCGCCGCG AGGGTGGCCA TCACGGCAAG
CCCCGCGACC GGGACGGCAA CCGCGACAAG CACGCAAACC GGGGCGACCG CGATGATCGC
GGTCCGCGTA AAGACCGCGA CAGGGACACA AAATCAACCC AGCCGCAGCG TTTCGAGGCA
AAGCCGCCAC GCAAGGAAAA GCCGATCGAT CCGGATTCTC CTTTCGCCAA ACTGGCTGCC
TTGAAGGAGC AGATGAAGAA GTAA
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| Protein sequence | MILSGRSVIA VLGPTNTGKT HYAIERMVAH GSGMIGLPLR LLAREVYTRL VERVGAAHVA
LITGEEKITP PNTRFSVCTV EALPRETKVA FVAIDEIQLA GDLERGHIFT DRLLHLRGRE
ETLLLGSATM KPILQHLLPG ITVVERPRLS QLFYAGEKKI TRLPQRTAIV AFSADEVYSI
AELIRRQRGG AAVVLGALSP RTRNAQVGLY QSGDVEYLVA TDAIGMGLNL DVDHVAFAQD
RKFDGYQFRN LNPGELGQIA GRAGRHLKDG TFGVTGRVDP FEPELVERLQ SHHFDPVKVL
QWRTAQFDFS SIANLRRSLD AAPKVAGLVR ALPAIDQQAL DYLARYPEVQ DLASSPNRVS
LLWDACALPD YRRITPAQHA DLILTLYSDL ARHGSVNEDF MAEQVHRSDR TDGEIDTLSA
RIAQIRTWTY VSNRPGWLAD PTHWQEKTRE IEDRLSDALH ERLTKRFVDR RTSVLMKRLR
ENGMLEAEIS VNGDVFVEGH HVGQLSGFRF TPISGTEGPD AKAVQTAAQK ALGLEFEARA
ARLHASGNGD LALSSDGLVR WLGDPVARLT GSDHIMRPRI LLLADEPLSG NAREHVVARI
ERFVNHHIST ILKPLDDLSR AEDLQGLSKG LAFQLVEGLG ILFRRDVTEE VKSLDQDARA
SMRRYGVRFG AYHIFMPALL KPAPAELITL LWALKNDGLD KPGYGDLIPV LAAGRTSVVT
DPSFERNFYK LAGFRFLGKR AVRIDILERL ADLIRPLLQW KPGTTPRPDG AYDGRRFTTT
TAMLSILGAT PDDMEEILKG LGYRADAVKA EEAQAFLGTQ DDKPAAAAAN APTQTAESVE
KTDEDDADQH GEASATETVA AEPAVLETVP NAEISAEATT EASAEVKEAE VAATEAPSAD
LLANPEGPTE PKPVLLWRPG GRNDNQRQAG RPQQGDRRPQ GAKRAPQQGE QKPDARTEGA
RTEGGRDRDD KRREGGHHGK PRDRDGNRDK HANRGDRDDR GPRKDRDRDT KSTQPQRFEA
KPPRKEKPID PDSPFAKLAA LKEQMKK
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