Gene Avi_4332 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_4332 
SymbolispG 
ID7386570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3654011 
End bp3655261 
Gene Length1251 bp 
Protein Length416 aa 
Translation table11 
GC content62% 
IMG OID643652986 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_002551157 
Protein GI222150200 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.692015 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCCAG CCGAAGACTT TGACCCGAAA CCACGCCGCG CATCCGTGGC CGTCGATGTC 
GGCGGCGTCA TTGTCGGGGG CGGCGCGCCT GTCGTCGTCC AGTCGATGAC CAATACCGAT
ACCGCCGATA TCGACGGCAC GGTGGCGCAG GTCGCAGCCC TGCATAAAGC CGGATCGGAA
ATCGTCCGCA TCACCGTGGA CCGCGACGAG AGTGCGGCTG CCGTGCCGAA AATCCGCGAC
CGTCTGGAGC GGCTCGGCCT TGATGTCCCT CTGATCGGCG ACTTTCACTA TATCGGCCAC
AAGCTTCTGG CCGATCATCC AGCCTGTGCC GAGGCGCTGG CCAAATACCG GATCAATCCG
GGCAATGTCG GCTTCAAGGA CAAGAAGGAC AAGCAGTTTG CCGATATCAT CGAGATGGCG
ATCCGCTATG ACAAGCCAGT GCGGATCGGC GTCAACTGGG GCTCGCTCGA CCAGGAACTG
CTGACCCAGT TGATGGACGA GAACCAGGCC AAGGGCTTTC CGCTCTCGGC CCGGCAGGTA
ACACGTGAAG CGATCTGCCA ATCGGCGCTT CTGTCTGCCG AACTGGCCGA AGAGATCGGC
CTTTCGCGCA ACCGCATCAT CCTGTCGGCC AAGGTCAGCC AGGTGCAGGA TCTGATCGCT
GTCTACTCCA TGCTGGCCTC GCGCTCCGAC CATGCGCTAC ATCTGGGCCT GACGGAAGCG
GGCATGGGCT CGAAAGGCAT CGTCGCCTCA TCGGCGGCCA TGGGCTATGT GCTGCAACAG
GGCATCGGCG ACACCATTCG CGTTTCGCTG ACGCCAGAGC CGAACGGCGA CCGGACCCGC
GAAGTGCAGG TGGCACAGGA ACTGTTGCAG GTCATGGGCT TTCGCCAGTT CATCCCGGTC
GTTGCGGCCT GTCCGGGCTG CGGGCGCACC ACGTCTACGG TGTTCCAGGA ACTGGCGCAG
AAGATCCAGA GCGATATCCG CAAGAACATG CCGGTCTGGC GGGAAAAATA TCCTGGTGTT
GAAGGGCTGA ATGTCGCGGT CATGGGCTGC ATCGTCAATG GCCCGGGGGA AAGCAAGCAT
GCCGATATCG GCATTTCCCT GCCCGGCACC GGCGAAAACC CGGCGGCACC GGTGTTTATC
GACGGTGAGA AGGCATTGAC GTTGCGCGGT CCGAAAATCG CCGAGGATTT CGAGGCTCTG
GTGATCGACT ATATCGAAAA ACGTTACGGT CAGCGGTCGG CAGCGGAGTA A
 
Protein sequence
MAPAEDFDPK PRRASVAVDV GGVIVGGGAP VVVQSMTNTD TADIDGTVAQ VAALHKAGSE 
IVRITVDRDE SAAAVPKIRD RLERLGLDVP LIGDFHYIGH KLLADHPACA EALAKYRINP
GNVGFKDKKD KQFADIIEMA IRYDKPVRIG VNWGSLDQEL LTQLMDENQA KGFPLSARQV
TREAICQSAL LSAELAEEIG LSRNRIILSA KVSQVQDLIA VYSMLASRSD HALHLGLTEA
GMGSKGIVAS SAAMGYVLQQ GIGDTIRVSL TPEPNGDRTR EVQVAQELLQ VMGFRQFIPV
VAACPGCGRT TSTVFQELAQ KIQSDIRKNM PVWREKYPGV EGLNVAVMGC IVNGPGESKH
ADIGISLPGT GENPAAPVFI DGEKALTLRG PKIAEDFEAL VIDYIEKRYG QRSAAE