Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4332 |
Symbol | ispG |
ID | 7386570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3654011 |
End bp | 3655261 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643652986 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_002551157 |
Protein GI | 222150200 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.692015 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCCAG CCGAAGACTT TGACCCGAAA CCACGCCGCG CATCCGTGGC CGTCGATGTC GGCGGCGTCA TTGTCGGGGG CGGCGCGCCT GTCGTCGTCC AGTCGATGAC CAATACCGAT ACCGCCGATA TCGACGGCAC GGTGGCGCAG GTCGCAGCCC TGCATAAAGC CGGATCGGAA ATCGTCCGCA TCACCGTGGA CCGCGACGAG AGTGCGGCTG CCGTGCCGAA AATCCGCGAC CGTCTGGAGC GGCTCGGCCT TGATGTCCCT CTGATCGGCG ACTTTCACTA TATCGGCCAC AAGCTTCTGG CCGATCATCC AGCCTGTGCC GAGGCGCTGG CCAAATACCG GATCAATCCG GGCAATGTCG GCTTCAAGGA CAAGAAGGAC AAGCAGTTTG CCGATATCAT CGAGATGGCG ATCCGCTATG ACAAGCCAGT GCGGATCGGC GTCAACTGGG GCTCGCTCGA CCAGGAACTG CTGACCCAGT TGATGGACGA GAACCAGGCC AAGGGCTTTC CGCTCTCGGC CCGGCAGGTA ACACGTGAAG CGATCTGCCA ATCGGCGCTT CTGTCTGCCG AACTGGCCGA AGAGATCGGC CTTTCGCGCA ACCGCATCAT CCTGTCGGCC AAGGTCAGCC AGGTGCAGGA TCTGATCGCT GTCTACTCCA TGCTGGCCTC GCGCTCCGAC CATGCGCTAC ATCTGGGCCT GACGGAAGCG GGCATGGGCT CGAAAGGCAT CGTCGCCTCA TCGGCGGCCA TGGGCTATGT GCTGCAACAG GGCATCGGCG ACACCATTCG CGTTTCGCTG ACGCCAGAGC CGAACGGCGA CCGGACCCGC GAAGTGCAGG TGGCACAGGA ACTGTTGCAG GTCATGGGCT TTCGCCAGTT CATCCCGGTC GTTGCGGCCT GTCCGGGCTG CGGGCGCACC ACGTCTACGG TGTTCCAGGA ACTGGCGCAG AAGATCCAGA GCGATATCCG CAAGAACATG CCGGTCTGGC GGGAAAAATA TCCTGGTGTT GAAGGGCTGA ATGTCGCGGT CATGGGCTGC ATCGTCAATG GCCCGGGGGA AAGCAAGCAT GCCGATATCG GCATTTCCCT GCCCGGCACC GGCGAAAACC CGGCGGCACC GGTGTTTATC GACGGTGAGA AGGCATTGAC GTTGCGCGGT CCGAAAATCG CCGAGGATTT CGAGGCTCTG GTGATCGACT ATATCGAAAA ACGTTACGGT CAGCGGTCGG CAGCGGAGTA A
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Protein sequence | MAPAEDFDPK PRRASVAVDV GGVIVGGGAP VVVQSMTNTD TADIDGTVAQ VAALHKAGSE IVRITVDRDE SAAAVPKIRD RLERLGLDVP LIGDFHYIGH KLLADHPACA EALAKYRINP GNVGFKDKKD KQFADIIEMA IRYDKPVRIG VNWGSLDQEL LTQLMDENQA KGFPLSARQV TREAICQSAL LSAELAEEIG LSRNRIILSA KVSQVQDLIA VYSMLASRSD HALHLGLTEA GMGSKGIVAS SAAMGYVLQQ GIGDTIRVSL TPEPNGDRTR EVQVAQELLQ VMGFRQFIPV VAACPGCGRT TSTVFQELAQ KIQSDIRKNM PVWREKYPGV EGLNVAVMGC IVNGPGESKH ADIGISLPGT GENPAAPVFI DGEKALTLRG PKIAEDFEAL VIDYIEKRYG QRSAAE
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