Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4300 |
Symbol | |
ID | 7386542 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3615264 |
End bp | 3616598 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643652958 |
Product | carboxy-terminal protease |
Protein accession | YP_002551129 |
Protein GI | 222150172 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0300488 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATACGTA GGGCTTCTAT AATGCTGGTT GGCGCGCTGA TGGGCGCGAC GGCGATGAGC GTTGTTTATT CGGCTGGCGT TCCTGCCCAG GCGGCAGGCA ATTCCACTTA CAAGGAACTG GCGATTTTTG GAGACGTGTT TGAGCGTGTC CGCGCTCAGT ATGTCACGCC TCCTGACGAG AAAAAGCTGG TCGAAGCCGC CATCAATGGC ATGTTGAGCT CTCTCGATCC CCATTCCAGC TACATGAACG CCCAGGAAGC GGCGGACATG CAGACCCAGA CCAAGGGTGA ATTTGGTGGC ATCGGCATCG AAGTGACGAT GGAAAACGAC CTGGTCAAGG TCATCACCCC CATCGATGAC ACACCCGGCG CCAAGGCCGG CATTCTGGCT GGCGACATGA TCTCCGAGAT CAATGGCACC CCCGTGCGCG GCATGCAGCT GAATGACGCT GTTGAAAAGA TGCGCGGCGC GGTCAATACC CCGATCAAGC TGACCATTTT GCGCAAGGGT GCTGACAAGC CGATCGAGAT GAGCGTCATG CGCGAAATCA TCCCGATCCG CGCCGTCAAG TCTCGCGTCG ATGGCGATGT CGGCTATGTC AGGGTGATTT CCTTCACCGA AAAGACCTAT GACGACCTGG AAGCCGCGAT CAACAAGATC AAGAAGGAAG TGCCAGCCGA TAAGCTGAAG GGCTTCGTTC TCGACCTGCG CCTCAATCCG GGCGGTCTGC TCGATCAGGC GATTTACGTC TCCGACGCCT TCCTGCAGAA GGGCGAAATC GTCTCCACCC GCTCGCGCGA TCCGGAAGAT ACCCGCCGCT TCAATGCCAC CGCTGGCGAT CTGACCGATG GCAAGCCGCT GATCGTGCTG GTCAATGGTG GTTCGGCCTC GGCATCTGAA ATCGTCGCTG GCGCGCTTCA GGATCTGAAG CGGGCAACAG TGGTCGGCAC CCGCAGCTTC GGCAAGGGTT CCGTGCAGAC CATCATCCCG ATGGGCGACA AGGGCGCGCT GCGCCTGACG ACGGCGCTCT ATTACACGCC ATCAGGCAAG TCGATCCAGG GGACTGGCAT CCATCCTGAT ATCAAGGTGG AAGAGCCGCT GCCCGCCGAT CTGCAGGGCA AGCTGCGCAC CGAGGGCGAA TCCTCGCTGC CGGGCCATAT CCAGGGCCAG AGCGAGACGG AAGAAGGCTC CGGCTCGGTT GCCTATGTGC CGCCGGATCC GAAGGATGAC GTGCAGCTTA ACTACGCACT CGACCTGCTG CGCGGCGCCA AGACAGACCC GTCCTTCCCG CCCGACCCAA GCAAGGCCGT GCTGGAAAGC GCCAAGAAGA AGTAA
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Protein sequence | MIRRASIMLV GALMGATAMS VVYSAGVPAQ AAGNSTYKEL AIFGDVFERV RAQYVTPPDE KKLVEAAING MLSSLDPHSS YMNAQEAADM QTQTKGEFGG IGIEVTMEND LVKVITPIDD TPGAKAGILA GDMISEINGT PVRGMQLNDA VEKMRGAVNT PIKLTILRKG ADKPIEMSVM REIIPIRAVK SRVDGDVGYV RVISFTEKTY DDLEAAINKI KKEVPADKLK GFVLDLRLNP GGLLDQAIYV SDAFLQKGEI VSTRSRDPED TRRFNATAGD LTDGKPLIVL VNGGSASASE IVAGALQDLK RATVVGTRSF GKGSVQTIIP MGDKGALRLT TALYYTPSGK SIQGTGIHPD IKVEEPLPAD LQGKLRTEGE SSLPGHIQGQ SETEEGSGSV AYVPPDPKDD VQLNYALDLL RGAKTDPSFP PDPSKAVLES AKKK
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