| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4295 |
|---|
| Symbol | sun |
|---|
| ID | 7386537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3610253 |
|---|
| End bp | 3611734 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643652953 |
|---|
| Product | Sun protein |
|---|
| Protein accession | YP_002551124 |
|---|
| Protein GI | 222150167 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.1846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGA ACGAAAGACG CGGCAAATCT CCAACCGATA AATCATCCTC CGGCCATCGG
GAGTCCAGCC TTGGGACCCC TGGCAAACAG GATGGCCAAT CCAGGCAGAA GTCCGACAGA
CCCCGCAGGC AGGTGCATGA CGACAAGCCC GGTCTGGAAG CGCGCATGGC CGCGAGCCGT
CTTCTGGCTG CGGTGATCGA CCGCAAGACC TCGCTGGATG GCATGATGGA CGGCGACCAT
GGCAATCCCG CCTATGCCGC CCTGTCGGAG GCCGATCGTG GCCTGGTGCG CGCCATTCTC
AACACCTCCT TACGCTTTCT GCCCCGCATC GAGGCCATGC TGGCCCGGCT GCTGGACGCG
CCTTTGCCCG ACGGTGCGCG CGCGCTTTAT CATTCGCTGA TCGTTGCCGC CGCGCAAATG
GTCTACCTTG ATGTCCCCGA CCATTCCGCT GTCGATCTAG CCGTCGAACA GGCCAATCGC
GATCCGCGCA GCCGCCGGTT CGCCAAGCTG GTCAATGCGG TTTTGCGTAG GCTGGGCCGT
GAAAAGCAGG CACTTTTGGC GGATGTCGAA GATGTCATCT GCATGCCCGA CTGGTTCTTC
GAACGGTTGA TCGCAGTCTA TGGGGAGGAG GAAGCGCGGC GGATTGCACA GGCCCAATTG
ACCCCGGCTG CCATCGACCT GACCGTCAAG GCCGATCCGG CAGTGTGGGC CGAAAAGCTC
AATGGAGTGG TGTTGCCGAC TGGCAGCATC CGGCTGGCAA GCTTTGCCGG AGCGGTTTCA
GCGCTTCCCG GCTTTGAAGA GGGGGCCTGG TGGGTTCAGG ACGCGGCGGC TGCCCTTCCC
GTGCGGATGT TCGGGTCCCT TGAAGGCAAG CGGGCCGTGG ACCTCTGTGC CGCGCCCGGA
GGCAAGACGG CGCAATTGGC TGCCGCGGGC GCGGTGGTGA CGGCGGTCGA ACAATCGGCC
AACCGGCTGA AGCGCCTGAA TGGCAACCTG CAACGGCTGG GGTTTTCAGC GCAACTGGTT
CATCAGGACC TGATGGAGTT CAATCTGGGC GAGGATCATC CGGGCTTTGA CGCCGTGCTG
CTGGATGCCC CCTGTTCTTC CACCGGCACG ACGCGCCGGC ACCCCGATGT GTTTTATACC
AAGGGGCCGC AGGATATCGT CAAGCTGGCG GGTGTGCAGG AACGGTTGCT GCGCCACGCC
GTGACACTGC TGGCGCCCGG CGGCTCCATC GTGTTTTCCA ATTGCTCGCT CGATCCACAG
GAGGGCGAGG ATGTTGTGGC TCGGGTTCTT GCCGATCATC CGGAACTGGA GCGGGTTGCG
ATGCAGGTCG CCGACTGGCC GGGGCTGGAA GACGCGATCA CCCCGCTTGG CGAATTTCGC
ACCACGCCTG CTATGTTACC GGGGCCTGCT ATGTTACCGG GCGGCGATAG CCATGCGGGC
GGGCTGGATG GCTTTTATGC CTGCCGTTTA CGCCGGGTTT AA
|
|---|
| Protein sequence | MELNERRGKS PTDKSSSGHR ESSLGTPGKQ DGQSRQKSDR PRRQVHDDKP GLEARMAASR
LLAAVIDRKT SLDGMMDGDH GNPAYAALSE ADRGLVRAIL NTSLRFLPRI EAMLARLLDA
PLPDGARALY HSLIVAAAQM VYLDVPDHSA VDLAVEQANR DPRSRRFAKL VNAVLRRLGR
EKQALLADVE DVICMPDWFF ERLIAVYGEE EARRIAQAQL TPAAIDLTVK ADPAVWAEKL
NGVVLPTGSI RLASFAGAVS ALPGFEEGAW WVQDAAAALP VRMFGSLEGK RAVDLCAAPG
GKTAQLAAAG AVVTAVEQSA NRLKRLNGNL QRLGFSAQLV HQDLMEFNLG EDHPGFDAVL
LDAPCSSTGT TRRHPDVFYT KGPQDIVKLA GVQERLLRHA VTLLAPGGSI VFSNCSLDPQ
EGEDVVARVL ADHPELERVA MQVADWPGLE DAITPLGEFR TTPAMLPGPA MLPGGDSHAG
GLDGFYACRL RRV
|
|---|
| |