| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4291 |
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| Symbol | |
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| ID | 7386534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3605220 |
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| End bp | 3606572 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643652950 |
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| Product | capsular polysaccharide biosynthesis protein |
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| Protein accession | YP_002551121 |
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| Protein GI | 222150164 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3562] Capsule polysaccharide export protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.261705 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATCAG TTGAGCCGAC AAAGGCTGTA TTGTTCCTTC AGGGGCCTCC CTCCATTCTC
TGGACGGAAT TTGCAAGAGC TTTTGAACAA GCGGGTGTAA AAACCCACCA TGTGAATTTT
ACGCTGGGCG ATTTTCTGTT CTGGCGCAAA CGTGGCGCTA AAAATTATCG CGGTTCCTTT
TCCAAATGGC CAGCCTATCT GCGGCGGTTG ATTGCCGAAA AGGGAATTAC CGATATCGTC
TATTATGCGG ACCGCCTGCC CTATCACGCC AAAGCCGCCG AGATTGGTGA GGAGCTTGGT
GTCCGCTGTC ACGCGGTTGA ATGGGGGTAT CTGCGGCCGG ACTGGCTGAC CTTCGAGCGT
GATGGCATGG GGCGCTTCTC GCATTTTCCC AACGATCCGA AGGCTATTCG CGCCATTGCC
GCCAAGGTGG AAGAACCGGA TATCGCGGTG AAATATCCGC ATACGTTTGG CCAAGAAGCC
TTCAACGAGG TGATCTATAA CCTGCTGAAT TTCTTCGGCA GGCCCTTCTA TCCGCTCTAT
AACGCCGACA AATATTATTC CGCTCTGGTG GATTATCTGC CCTGGCTGCT CAAAGCGGGC
GTCAAGCCTG CTCGCCTGCC GGAGGGATTT CTGGAGGACG GCCAGCCGCC TTTCTATCTC
GTCGCCCTGC AATTGCAGAG CGATTACCAG ATCCGTGCCA ATTCCCCCTA TCGGCATCTA
CGCGACATGA TGCGGCAGGT GATCGCTTCT TTCGTCAAAA ATGCGCCAGC CGGTAGCAAG
CTGCTGTTTA AGCAGCATCC ACTCGACAAT GGTCTGGAGC GTTGGCACAA GGTGCTTCGC
CATATCGCCC GAGAATTCAA GATTGAGGAC CGCGTCGTCT TTATCGAAGA AGGCGACCTG
CATGATATTC TGCAAAAGAC GGCGGGTGTG GTCATCGTCA ATTCCACGGT TGGCCTTCAC
AGCCTGCGCG CCCAAAAGCC AACCATCGTG CTGGGCTGCG CGGTGTTTGA CGTGCCGGGG
CTGACCCATC AGGGCCGGCT GGATGATTTC TGGAAGCGGC CGGAGCCGGT CGATCCGGAG
TTGATGCGCG ATCTCGTCAA GGCCATGGCC GCGACCATCC AGATCAAGGG CGACTTCTTC
AACAAGGCGG GCCGTCAGGC GGCCATTGGC GCCATGGTGC AGCGGGTTAT CGAGGGAACG
GTCAATATGC CCGACGCCTT CATTGATCCG CCACCGAGGC TTACCTCGCC CAAGGGTATC
CTGACGGTTC TGGGAAGACC CGTCGAACTC GATTGGGAAG AAGACGCGGC GGTGCCTGAT
ATGACCTATG CGCGGTCCGG CCCAATCCGC TGA
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| Protein sequence | MTSVEPTKAV LFLQGPPSIL WTEFARAFEQ AGVKTHHVNF TLGDFLFWRK RGAKNYRGSF
SKWPAYLRRL IAEKGITDIV YYADRLPYHA KAAEIGEELG VRCHAVEWGY LRPDWLTFER
DGMGRFSHFP NDPKAIRAIA AKVEEPDIAV KYPHTFGQEA FNEVIYNLLN FFGRPFYPLY
NADKYYSALV DYLPWLLKAG VKPARLPEGF LEDGQPPFYL VALQLQSDYQ IRANSPYRHL
RDMMRQVIAS FVKNAPAGSK LLFKQHPLDN GLERWHKVLR HIAREFKIED RVVFIEEGDL
HDILQKTAGV VIVNSTVGLH SLRAQKPTIV LGCAVFDVPG LTHQGRLDDF WKRPEPVDPE
LMRDLVKAMA ATIQIKGDFF NKAGRQAAIG AMVQRVIEGT VNMPDAFIDP PPRLTSPKGI
LTVLGRPVEL DWEEDAAVPD MTYARSGPIR
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