Gene Avi_4260 details

Gene Information

• Locus tag: Avi_4260
• ID: 7386509
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3577783
• End bp: 3578442
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643652924
• Product: thiamine pyrophosphokinase
• Protein accession: YP_002551096
• Protein GI: 222150139
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG1564] Thiamine pyrophosphokinase
• TIGRFAM ID: [TIGR01378] thiamine pyrophosphokinase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCATGA CGGAAAGCAC CTTCACCATT CTGCTCGGCG GTCCCCTCGC CATTACGCCC 
CGGCTGCTCG GCTCCGTTGC AGGAACCCGC GCCATCGCTG CCGATGGCGG CATGCGCCAT 
GCCGAACCGC TGGGATTGAC GCCTGAGCTT TGGGTGGGTG ATTTCGACAG TTCCGACGAT 
CTTCCGGCAG ACCGGTTTCC GGATATCCCG CGCCTTCCCT ATCCCGCCCG CAAGAACCTC 
ACAGATGGTG AAATCGCCAT TGAAGAAGCC CGCAAGCGTG GCGCGACCTC CCTTCTGCTG 
GCGGGCGCGC TTGGGGGAGA GCGATCCGAT CATGCGATGA TGCATCTGCT GCTAGCGGTG 
GCGCTGGCGG CCCAGGGACT TGATCTGCAC CTCACATCCG GTGAGGAGGA GGCATGGCCG 
CTTCTGCCGG GTAAAACCAT GACACTGGAC CTGCCGCAGG GTTCGTTGTT TTCCATTCTC 
GGCTTTTCCG CGCTGGCAGG CCTCACCATC GACGGCGCGC GCTATCCATT GCAGGGTTTC 
GATCTGCCGT TCGGATCGTC CCGCACCATT TCCAATGTGG CCGAAGGTCC GGTAACGCTG 
TCGCTTGGCA GCGGAGATGC CGTGATCCTT GCCCGCCCTT ATGACATGAC CGGAGCGTGA 

 

Protein sequence

MAMTESTFTI LLGGPLAITP RLLGSVAGTR AIAADGGMRH AEPLGLTPEL WVGDFDSSDD 
LPADRFPDIP RLPYPARKNL TDGEIAIEEA RKRGATSLLL AGALGGERSD HAMMHLLLAV 
ALAAQGLDLH LTSGEEEAWP LLPGKTMTLD LPQGSLFSIL GFSALAGLTI DGARYPLQGF 
DLPFGSSRTI SNVAEGPVTL SLGSGDAVIL ARPYDMTGA