| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4235 |
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| Symbol | |
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| ID | 7386987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3559096 |
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| End bp | 3559758 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643652905 |
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| Product | possible lolA type protein |
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| Protein accession | YP_002551078 |
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| Protein GI | 222150121 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.48726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAAAAGA AGACGTTTGC CCCGGCAGGC ATGGCAGGGA TGATTGGCCG CCGGGGATTT
ATCGGCATGG CGGCTGCGGG GATCGCTGTT GCGGCCATGG GCGCCACAGT CTCACCCGCA
TATGCTCAGG CCCAGGCCAG CGCCGCGCAG AGGATCGCCG ATCATTTTGC CTCGGTGAAA
ACCATGATGG GCGAGTTCGT GCAGTTTGGC CCGCGCGGTG AACAGACAGC CGGAAAATTC
TATATCGAAC GTCCCGGCAA GCTGCGCTTC AACTATGAGC AGCCCTCGCC GATGCGGGTG
ATTTCCGATG GCCGTAACGT GGCAATCGGC AACCTGAAAA TGAAGACCTG GGATGTCTAT
CCGCTGTCGA AGACGCCGCT GAGTCTGCTT TTGTCCGACC GCATCGATCT CGGCCACCAG
ATGGTGCGGC AGGTCAAGGA AGAGCAGGAC CTGACCACCA TCGTGCTGGG CGACAAGTCG
ATCTTCGGCG ATCAGACCAT CACCCTGATG TTTGATCCGA AGACCTTCGA GCTGCGGCAA
TGGACCGTCA CCGATGCGCA GGGCAAGGAC ACGTCGGTAA TGATCTTCAA CGTCCAGCAG
GGCGTTAATT TCGATGAAAA AGTTTTCGAA GTTCCCTATG ACGATATCCG CAATCGCGGC
TGA
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| Protein sequence | MQKKTFAPAG MAGMIGRRGF IGMAAAGIAV AAMGATVSPA YAQAQASAAQ RIADHFASVK
TMMGEFVQFG PRGEQTAGKF YIERPGKLRF NYEQPSPMRV ISDGRNVAIG NLKMKTWDVY
PLSKTPLSLL LSDRIDLGHQ MVRQVKEEQD LTTIVLGDKS IFGDQTITLM FDPKTFELRQ
WTVTDAQGKD TSVMIFNVQQ GVNFDEKVFE VPYDDIRNRG
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