| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4191 |
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| Symbol | ccmC |
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| ID | 7386956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3530233 |
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| End bp | 3531015 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652874 |
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| Product | ABC transporter membrane spanning protein (heme) |
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| Protein accession | YP_002551047 |
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| Protein GI | 222150090 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
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| TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.897881 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCGACA ATAGCCTTGC TTCGACCAAG CTTACTGCCC GATTAAACGC GCTGGCCAAT
CCGACCCGGT TTCTGGCACT GGTAGCGCGT GTCCTGCCAT GGATGGCGGG AATAACCGTT
ATTCTGCTGG CCGTTGGCCT GACGCTCGCC TTTACGACAG AGGGCGACTA CCAGCAGGGC
GATACGGTGC GGATCATGTA TATTCATGTG CCCGCCGCCT GGCTGGCAAT GATGTGCTAT
TCGGTCATGG CGATTTCCGC CATCGGCACG CTGGTCTGGC GTCATCCGCT GGCCGATGTC
AGCCATCGGG CTGCGGCCCC GTTGGGGGCA GCCTTCACCT TCATCGCGCT GGTCACCGGC
TCGCTCTGGG GGCGACCGAT GTGGGGAACA TGGTGGGCCT GGGGCGATGC CCGCCTGACC
TCGGTGTTCA TTCTGTTCCT GATGTATCTG GGCCTGATCG CCCTCAACCG GGCCATGGAC
GATCCGTCGA AATCGGCGCG GATCAGTTCG GTGCTGATCC TGGTCGGCTT CGTCAATATT
CCGATCATCA AATTTTCCGT GGAATGGTGG AATACGCTGC ACCAGCCTGC CAGCATCATG
AAGCTTGGCG GCCCAAGCGT CGATCCGGAG TTTTTGCGGC CACTGCTGAT CATGGCCGTG
GCCTTCACGC TGCTGTTCTT CACCCTGCAT TTGATGGCGA TGCGTAACGA GATCTGGCGG
CGGCGAATCA TGGCCCAGCG CCGTCTTGCC GCCCGGGTCG CCTCGCAGGA GAGCGCATCA
TGA
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| Protein sequence | MTDNSLASTK LTARLNALAN PTRFLALVAR VLPWMAGITV ILLAVGLTLA FTTEGDYQQG
DTVRIMYIHV PAAWLAMMCY SVMAISAIGT LVWRHPLADV SHRAAAPLGA AFTFIALVTG
SLWGRPMWGT WWAWGDARLT SVFILFLMYL GLIALNRAMD DPSKSARISS VLILVGFVNI
PIIKFSVEWW NTLHQPASIM KLGGPSVDPE FLRPLLIMAV AFTLLFFTLH LMAMRNEIWR
RRIMAQRRLA ARVASQESAS
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