| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4188 |
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| Symbol | ccmA |
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| ID | 7386954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3528843 |
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| End bp | 3529508 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652872 |
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| Product | cytochrome c biogenesis protein CcmA |
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| Protein accession | YP_002551045 |
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| Protein GI | 222150088 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4133] ABC-type transport system involved in cytochrome c biogenesis, ATPase component |
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| TIGRFAM ID | [TIGR01189] heme ABC exporter, ATP-binding protein CcmA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGCTAAACA AAGGGGAAAT CACCCGGCTA AATGCCCTGG AACTGGCCGC AAAACGCGGG
GAAGATCTGC TGTTTCGCAA CGTCTCCTTC ACGCTGTCAT CTGGCGAAGC GCTGATCCTG
ACCGGTCGCA ACGGATCGGG AAAATCCACC TTGCTGCGGG TCATCGCCGG CTTCATCCGG
CCAGAGCGCG GCTCCGTCCT GTTCGAATCA CCTGGCACCG AGCCACGACC GCCCCGCGAG
GTCAGCCATT ATCTCGGCCA TCGCAACGGC ATGAAGGCGG AACTGACGGT GGCTGAAAAT
CTGGAATTCT GGAAGGCATT TCTCGGACAG CCCCAAGGCG GCGCGGGTAT CTCCATCGAA
GAGGCCGCCG ATCAGGTCGG GCTGGGCGGC ATCACCCACC TGCCCTATGG CTATCTTTCT
GCCGGGCAGC AGCGGCGCTT TGCCATGGCC CGGCTGCTGG TCTCCTACCG GCCGATCTGG
ATTCTCGATG AGCCGACAGC GGCACTGGAC GTGAAGGCCG ATGAGATGTT TTCAAGCCTG
ATCCGCGCCC ATCTGGCCCA AGGCGGCATG GTGCTGGCCG CCACCCACCA GCCACTGGGC
CTGGAAAGCC CGAAACAGTT GGAAATGAAG GGCTTCGACT ACGGCGATCT GGAGGATGCG
GCGTGA
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| Protein sequence | MLNKGEITRL NALELAAKRG EDLLFRNVSF TLSSGEALIL TGRNGSGKST LLRVIAGFIR
PERGSVLFES PGTEPRPPRE VSHYLGHRNG MKAELTVAEN LEFWKAFLGQ PQGGAGISIE
EAADQVGLGG ITHLPYGYLS AGQQRRFAMA RLLVSYRPIW ILDEPTAALD VKADEMFSSL
IRAHLAQGGM VLAATHQPLG LESPKQLEMK GFDYGDLEDA A
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