| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4176 |
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| Symbol | |
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| ID | 7386945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3517528 |
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| End bp | 3518115 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643652863 |
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| Product | 2'-5' RNA ligase |
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| Protein accession | YP_002551036 |
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| Protein GI | 222150079 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1514] 2'-5' RNA ligase |
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| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0620865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAGAT TGTTCACTGC CCTCGAAATT CCGCGCAACG TGGCCTTGAG CCTGTCTTTG
CTGCGCGGCG GGCTTCCGGG AGCCCGATGG ATCGATGTGG AAAATTACCA TATCACCCTT
CGGTTCATAG GCGATATCGA CGGGCGCACC GCCGATGAGA TCGTCGATAG GCTGGATCGC
ATCGACCGGC CGGAATTCCA GCTCAGTCTG AACGGCATCG GGTCCTTCGG GTCGAAAAAA
CCGCATTCCA TCTGGGCAGG TGTTACACCG CATCCGCAGA TGACGGCGCT CCAGGGCGAA
ATCGAGCGGA TCTGCCAACG AGTGGGGCTG CCACCCGACC CCCGAAAGTT TATGCCGCAT
GTGACACTGG CGCGGCTGAA GTCATCGAGA CTGGATGACG TTGTTCATTA TTTATCAGGG
CGCGGTAATT TCCAGACCGC GCCCTTTTTC GTTCCAAGAT TCGTGCTGAT GTCCTCCAAG
GAATCGGTGG GGGGTGGCCC TTATCTGAAG GAGGAAATCT TCCCCCTCTA TGAAGAGCGC
TCAGAGGTCA GTTTTTCAGA ACATGCCGAG CATTCGCTGA ACGGATAA
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| Protein sequence | MPRLFTALEI PRNVALSLSL LRGGLPGARW IDVENYHITL RFIGDIDGRT ADEIVDRLDR
IDRPEFQLSL NGIGSFGSKK PHSIWAGVTP HPQMTALQGE IERICQRVGL PPDPRKFMPH
VTLARLKSSR LDDVVHYLSG RGNFQTAPFF VPRFVLMSSK ESVGGGPYLK EEIFPLYEER
SEVSFSEHAE HSLNG
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