Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4164 |
Symbol | rhtB |
ID | 7386939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3513322 |
End bp | 3513963 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643652857 |
Product | RhtB family transporter |
Protein accession | YP_002551030 |
Protein GI | 222150073 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTTCA TTCCGGGCCT ACCGACCCTT CTAGCCTTCA CAGCCGCCTG CCTGTTGCTG GCCGCGACGC CGGGGCCGGA CATGACACTC TCCATCAGCC GGGCGCTGCG CGATGGCAAG GCGGCGGGTC TTGCCGTGCT GCTCGGCACC AATCTCGGGA TTGCGGTCCA TACGATGCTG GTGGCTTTCG GGGTCTCCGC CCTGATCGTT GCTTCGCCAA CGGCCTTTCT GATCCTAAAA AGCGGTGGGG CTGCTTATCT GGCCTGGCTC GCCTTTCAGG CGATCCGCCA CGGCTCAAAA TTCGTCGCCA CGCCTGAAGC GGGCGCAAAG GGTAGCGTGA AGGCGGCTTT TCTCAACGGG ATCTGGGTCA ATCTGCTCAA CCCCAAGGTT ATCATTTTCT TCATGACCTT CCTGCCGCAA TTCGTCACCG CCCATGACCC TGATGTCACA GGCAAGCTGC TGTTCCTCGG TTTCTGGTTC ATGCTGGTGT CGCTACCCGT CACGGTCGCC ATCGTGCTGG CCGCCGACAA GCTGGCTGGC TGGCTGCAAC AAAACCCGAA AGTGCTGAGG GGAATGGATT ACACCTTTGC AGGCGTGTTT TCAGTCTTCG CCGCCAAGAT CCTGATGACC CAAGCGCGAT AA
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Protein sequence | MTFIPGLPTL LAFTAACLLL AATPGPDMTL SISRALRDGK AAGLAVLLGT NLGIAVHTML VAFGVSALIV ASPTAFLILK SGGAAYLAWL AFQAIRHGSK FVATPEAGAK GSVKAAFLNG IWVNLLNPKV IIFFMTFLPQ FVTAHDPDVT GKLLFLGFWF MLVSLPVTVA IVLAADKLAG WLQQNPKVLR GMDYTFAGVF SVFAAKILMT QAR
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