| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4159 |
|---|
| Symbol | |
|---|
| ID | 7386935 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3508655 |
|---|
| End bp | 3509833 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643652853 |
|---|
| Product | MFS permease |
|---|
| Protein accession | YP_002551026 |
|---|
| Protein GI | 222150069 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA ACCGCACCTC CCTGCTTGGT GCGCTGTTGA CCATGATCGG GCCGCTGTCC
ATGGCGATCT ACACGCCCGC CATGCCGCAA ATGGTCCATG CCTTTTCCAC CACGGATGCG
GCCATCAAGC TCAGCCTGTC ACTCTATTTT GCGGGTTTTG CCTGCGCGCA ATTGCTGTCC
GGCCCGTGTT CGGATGCGTT CGGACGACGC CATGCAACGC TGGGCTTTCT GGGCATCTAC
CTCCTCGGCA GCCTGGCCGC CGCCTTTGCG CCCTCTGTCG AGTTCCTGCT GGCCGGGCGC
ATCATTCAGG GCATCGGCGC ATCCGTCGGG GTCACGGTGT CGCGCGCCAT GGTCCGCGAC
CAGTTCGTCG GGGAGCAGGC GTCTCGGATC ATCAATATGA TCGGCATTAT GCTGGCCATC
GGACCGGCCA TGGGGCCGAC CGTCGGTGGG CTGGCACTTG TCGCCTTCGG CTGGCAATCG
GTGTTTCTGC TGATGGTCGG GTTTGGGGCG ATCAGTATCG TCACGGTCGC TATGCTAATG
GCGGAAACGG CGGTGCCGGA CCGGCAGATG ATCCGCCCGG CACGGCTCAT CGCCTCTTAC
GCAACCTTGA TTGCCGACCG GCGGGTGCTA TGCTCGGCCC TGGTTCTGGG CGGCTGTGTC
GGCGCACTTT ATGCGCAATC GACCATGCTG CCTTTCGTCC TGATCAACAA GGTCGGGTTG
TCGCCAGCGC AATTCGGTCT TGGCATGTTG ATGCAAACCG GCTCCTATTT CGCCGGTTCA
GTGGCGCTGC GGCTGGTATC AAAGCATTTG GTGCCCGGTC AGGCGCTACG CTTCGGGCTG
GCGCTGGCTG GCTGCGGTGG ATTGCTGATC TTTTTGTCCA CCCATCTGCT GACCCCGACT
TATCTGTCCA TCATGGGACC GGTCGCCGTC TGCTCTTTCG GCATGGCCTT CGTCATTCCC
GACATCTCCA CCGCAGGTCT GTTGCCACAT CCAAAACTGG CAGGGTCGGC GGCGGCCCTG
ATGGGGTTCG TGCAGATGAG CTGCGGTTTC CTGGGCGGCC TTGCCGCTTC CTGGCTCGGC
GATCCGCTGA CAGCCTTCGG CACCATCATT CCCCTGATGG AATGGATGGC GATTGTCGCC
TATGTCGGCT TCCTTCGTGC CTGGAAACAG GTCCAATAA
|
|---|
| Protein sequence | MSENRTSLLG ALLTMIGPLS MAIYTPAMPQ MVHAFSTTDA AIKLSLSLYF AGFACAQLLS
GPCSDAFGRR HATLGFLGIY LLGSLAAAFA PSVEFLLAGR IIQGIGASVG VTVSRAMVRD
QFVGEQASRI INMIGIMLAI GPAMGPTVGG LALVAFGWQS VFLLMVGFGA ISIVTVAMLM
AETAVPDRQM IRPARLIASY ATLIADRRVL CSALVLGGCV GALYAQSTML PFVLINKVGL
SPAQFGLGML MQTGSYFAGS VALRLVSKHL VPGQALRFGL ALAGCGGLLI FLSTHLLTPT
YLSIMGPVAV CSFGMAFVIP DISTAGLLPH PKLAGSAAAL MGFVQMSCGF LGGLAASWLG
DPLTAFGTII PLMEWMAIVA YVGFLRAWKQ VQ
|
|---|
| |