| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4145 |
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| Symbol | hemC |
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| ID | 7386921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3493225 |
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| End bp | 3494154 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643652839 |
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| Product | porphobilinogen deaminase |
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| Protein accession | YP_002551012 |
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| Protein GI | 222150055 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0181] Porphobilinogen deaminase |
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| TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.501795 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACGA AACCTTTCCG CATCGGCACA CGCGGCAGCC CTTTAGCACT GGCCCAGGCC
CATGAAACCC GCGAGCGTCT GGCGACGGCC CACGGCCTTT CGCCTGATAT GTTCGAGATC
GTCGTCCTCT CGACCACCGG CGACCGCATT ACCGACCGGT CTTTGGCGGA AATCGGCGGC
AAGGGCCTGT TCACCCTGGA GCTGGAACAG CAATTGCTGT CCGGCGGGCT GGATTTCGCC
GTGCATTCCT CCAAGGACAT GCCAACCGCC CTTCCCGACG GGTTGGAGAT TTCCGCCTAT
CTGCCACGGG AAGACATGCG CGATGCCTTT ATTGGCCGCA CGGCACCGAA ACTGCTGGAG
CTTGCCGAGG GCGCGGTCAT CGGCTCGGCC TCGCTCCGGC GTCAAGCGCT GATTCGCAGG
CTTCGGCCTG ACCTCCAGGT CATTACCTAT CGCGGCGCGG TGGAGACCCG GCTTCGCAAG
CTGGCCGCAG GCGAGGTCGA TGCCACGCTG CTGGCCGTGG CCGGTCTGAA GCGGCTGGAC
AAGGAAACCG TGATTACCCA ATATCTAGAC CTCGAAAGCT TTCCGCCGGC ACCGGCCCAA
GGGGCGATCT GCATTGAGGC ACGGGTCGAT GACCGGCGCA TCCAGGATCT TCTGGCTCCG
ATCAATCATC GCCCGACTTT TGACGCGGTT TCCTGTGAGC GTGCCTTTCT GGCCGCGCTC
GACGGTTCCT GCCGCACGCC GATTGCCGGC TATGCGATAT CGGATGGCGA AATGATCCGT
CTAACCGGGA CGATCCTGAC GCCGGACGGG CAGGTCTCGC ATTCGGTCGA GGCCGAGGGC
CGCTGTGCCG ATGGCCTTGC GCTCGGCTGG TCGGCGGGCG AAAAGGTAAG AGACAAGGCC
GGACCCGGCT TTTTCGAGGG ATGGACCTGA
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| Protein sequence | MQTKPFRIGT RGSPLALAQA HETRERLATA HGLSPDMFEI VVLSTTGDRI TDRSLAEIGG
KGLFTLELEQ QLLSGGLDFA VHSSKDMPTA LPDGLEISAY LPREDMRDAF IGRTAPKLLE
LAEGAVIGSA SLRRQALIRR LRPDLQVITY RGAVETRLRK LAAGEVDATL LAVAGLKRLD
KETVITQYLD LESFPPAPAQ GAICIEARVD DRRIQDLLAP INHRPTFDAV SCERAFLAAL
DGSCRTPIAG YAISDGEMIR LTGTILTPDG QVSHSVEAEG RCADGLALGW SAGEKVRDKA
GPGFFEGWT
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