| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4112 |
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| Symbol | priA |
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| ID | 7388906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3465167 |
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| End bp | 3467386 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652814 |
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| Product | primosome assembly protein PriA |
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| Protein accession | YP_002550987 |
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| Protein GI | 222150030 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
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| TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCG AATCGTCAGA TCTGTTTGGT CCGCGCGCCA AGGCCGGTCC TGCCCGCCGC
GCCGTCCCCG TCCTGGTGCC CTTGCCGGCA CCGGGGCCTT ACAGTTACGC CGTTCCCGAT
GAGATGATGC TGACGCCGGG CGCCATCGTG CAAGTGCCGC TTGGGCCCCG CAAAGTGGTC
GGCGTTGTCT GGGATGGCGA GGGTGACGGG GCCAAGGTCG ATCCCGCCAA ACTGCGCAGC
ATCGAAAAGC TGTTCGATTG CCCTCCGCTG GACGTGGGCA TGCGCCGGTT CATCGACTGG
GTGGCGGCCT ATACTCTTTC TCCCCCCGGA TTGGTGGCTC GCATGGCCTT GCGTGCGCCT
GCCGCTTTCG ATCCGGACCC GATGATCGAA GGCTTGCGCT ACAGCGGTCA TGCCCCGGAA
AAACTGACCC CGGCCCGCAG GAAAGTGCTG GAATTGGCCG AGGACGGGCT TTCCTGGACC
AAGAGCGGGC TTGCGCATGC AGCAGGGGTC TCGACCTCGG TTGTTGACGG CATGGCAAAG
CTCGGCCTGT TCGAAACCGT ATTTCTACCG CCTCCACCCT TGGTGGCGCT GCCGGACCCG
GATTACGCCG CCCATCGTCT CTCCGGTCCG CAGCTGGGCG CAGCTGAGGT GCTGGTGGAG
AGTGTTCGGG ATGGCGGGTT TTCGGTGGCG CTGATCGATG GCGTCACAGG ATCCGGCAAG
ACGGAAGTCT ATTTCGAAGC GATTGCCGAA ACCCTGCGCC AGGGCCGCCA GGTGCTGATC
CTTCTACCGG AAATCGCGCT GACCACCGCT TTTCTGGAGC GGTTTCAGGA CCGTTTTGGT
GCCAAGCCCG GCGAATGGCA TTCCGACCTT GCCACCCGGA CGCGGGAAAA AGTCTGGCGC
CAAACGGCGA CAGGCGATAT TCGGGTGGTT GCCGGTGCGC GCTCGGCGCT TTTTCTACCC
TTTGCCGATC TGGGGCTGAT CATTGTCGAT GAGGAGCATG ATCCGGCCTT CAAGCAGGAA
GACAGGGTGT TCTACAATGC CAGGGACATG GCAGTGGTGC GGGCGCGGAT TGCCAGCATT
CCTGCTGTGC TGGTGTCGGC CACGCCGTCG GTTGAAAGTC AGGTCAACAG TTATAGCGGT
CGCTACAAGC GTATTCACCT GCCGACCCGT TTTGCCGATG CGGCGATGCC GGATCTGCAT
CTTGTCGACA TGCGCCGCCA TCCGCCGGAA CGGGGCGGGT TTCTTTCGCC TCTCATGCTG
CGGGCCATCG GCAAGACGGT GGAAAAGCAG CAACAGGCAC TGTTGTTTCT CAATCGGCGG
GGCTATGCGC CGCTGACGCT CTGCCGGGTC TGTGGCCATC GTTTCCAATG CCCGCAATGT
TCCAGTTGGC TGGTGGAACA CCGGTTTCGC GGCCAGATTC AATGCCATCA ATGCGGTTAT
GCCGAGCCGA CGCCCAATGC CTGCCCCGAA TGCGGGACGC TGGACCATCT CGTTGCCTGC
GGGCCGGGCG TGGAGCGGAT TGCCGAGGAG GTGGAGCGGC ACTTCCCAGA CGCTCGCACG
CTGGTCTTGT CGTCGGATCT CGGCGGCGTC AAACGGCTCA GGCTGGAACT GGAAGCCATT
GCCAAGGGCG AGGCGGATAT CGTCATCGGC ACGCAATTGG TGGCCAAGGG GCATAATTTT
CCGCTGATGA CGCTTGTCGG TATCGTTGAT GCCGATATCG GCCTGGCCAA TGGTGATCCA
CGCGCCGCCG AGCGCACCTT TCAACTGTTG AGCCAGGTGA CGGGTCGGGC AGGGCGTACC
GGTTTGAAGA GTCATGGCCT ATTGCAGACC TATCAGCCGC AGCATCCGGT GATGCAAGCC
ATTGTTTCCG GTGATGCCGA TGCGTTTTAC GAGCGGGAAA TTACCGAGCG GGAGCGGGCG
GTGCTGCCGC CTTACGGACG GCTTGTCTCG ATCATCGTGT CGGCGGACAA CAGGGCGGAT
GCCGAAACCC ATGCCCGGCA ATTGCGCCAG GCCGCCCCTG CTGTCGGCGG CATCGCCATT
CTGGGGCCTG CCGAGGCACC GCTGGCGTTG ATCCGTGGCC GCCATCGTTT CAGACTGCTC
ATTCATGGCC GTAAAGCCAG CGACATGCAG GCTTTCGTTG CTGCGATGCT GGGCAACGGC
CCGAAAGAGC GTCGCTCCAT CCAGGTGCAA GTGGATGTCG ATCCGCAGAG CTTTCTTTGA
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| Protein sequence | MSTESSDLFG PRAKAGPARR AVPVLVPLPA PGPYSYAVPD EMMLTPGAIV QVPLGPRKVV
GVVWDGEGDG AKVDPAKLRS IEKLFDCPPL DVGMRRFIDW VAAYTLSPPG LVARMALRAP
AAFDPDPMIE GLRYSGHAPE KLTPARRKVL ELAEDGLSWT KSGLAHAAGV STSVVDGMAK
LGLFETVFLP PPPLVALPDP DYAAHRLSGP QLGAAEVLVE SVRDGGFSVA LIDGVTGSGK
TEVYFEAIAE TLRQGRQVLI LLPEIALTTA FLERFQDRFG AKPGEWHSDL ATRTREKVWR
QTATGDIRVV AGARSALFLP FADLGLIIVD EEHDPAFKQE DRVFYNARDM AVVRARIASI
PAVLVSATPS VESQVNSYSG RYKRIHLPTR FADAAMPDLH LVDMRRHPPE RGGFLSPLML
RAIGKTVEKQ QQALLFLNRR GYAPLTLCRV CGHRFQCPQC SSWLVEHRFR GQIQCHQCGY
AEPTPNACPE CGTLDHLVAC GPGVERIAEE VERHFPDART LVLSSDLGGV KRLRLELEAI
AKGEADIVIG TQLVAKGHNF PLMTLVGIVD ADIGLANGDP RAAERTFQLL SQVTGRAGRT
GLKSHGLLQT YQPQHPVMQA IVSGDADAFY EREITERERA VLPPYGRLVS IIVSADNRAD
AETHARQLRQ AAPAVGGIAI LGPAEAPLAL IRGRHRFRLL IHGRKASDMQ AFVAAMLGNG
PKERRSIQVQ VDVDPQSFL
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