Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4101 |
Symbol | |
ID | 7388897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3456137 |
End bp | 3457072 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643652805 |
Product | transcriptional regulator LysR family |
Protein accession | YP_002550978 |
Protein GI | 222150021 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0491587 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGACA AGCTGGAATT TTTCATCGCT CTTGCCCGCG CCCAGCATTT CGGTCGTGCT GCGGAAGAAT GCGGCATTTC CCAGCCCACG CTGTCAGCGG CAATCCGCCA GCTTGAAGAT CAGCTGGGTG TGATCCTGGT GCAACGCGGT TCCCGGTTTC AAGGCCTGAC GCCCGAGGGG CAGCGGGTGC TGGAATGGGC GCGGCGGATT GTCGGCGATG CGCGCACCAT GCGCGAGGAA ATGCGGGCGG CGCGCAATGG TCTGGCTGGA CATATTCGCC TTGCGGTGAT CCCGACGGCG CTGGCCATGG TGCAGAGGCT GACGGAACCA TTTCAGGCGC ATCATCCGGC TGTGACGTTC CAGGTGGTGT CGCGCAATTC TCTCCAGGTC CTCAGTCTTC TGGAAAATCT CGAGATTGAT GCAGGTATCA CCTATCTCGA CAATGAACCG CTTGGCCGGG TGACGTCTGT CCCGCTCTAT GCCGAGCGTT ATCACCTGAT TGCGGCGACC GGCACGCCGC TGGCCGACCG GGAAAGTGTG ACCTGGCGAG AGGTTTCTGA TCTTCGGCTT TGCCTATTGA CGGCCGATAT GCAGAACCGG CGCATCATTA ATCAGCATTT CACCGAGGCG GGAGTGGTGC CTCGACCGAC ACTGGAATCC AACTCGATGA TCGTGTTGTT TTCTCATATC CGAACCGGAC AATGGTCATC GATCATGCCG CGTAACGTTG CGGAATCCTT CGGTTTTCCG GAGGAAATTC GCATGGTGCC GATTGTCGAG CCGCAGGCCC AGCATCTTGT CGGGCTGGTT GCCACCCATC GCGAACCCTA TACGCCATTG GTTTCAGCGC TATTGCATGA GGCGCGCCGC CTCGCAGCTG CACAAGTCTT TGATAGGTTT TTTCTATCGC GTAACAATAC TGCGGTATTG ACCTGA
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Protein sequence | MIDKLEFFIA LARAQHFGRA AEECGISQPT LSAAIRQLED QLGVILVQRG SRFQGLTPEG QRVLEWARRI VGDARTMREE MRAARNGLAG HIRLAVIPTA LAMVQRLTEP FQAHHPAVTF QVVSRNSLQV LSLLENLEID AGITYLDNEP LGRVTSVPLY AERYHLIAAT GTPLADRESV TWREVSDLRL CLLTADMQNR RIINQHFTEA GVVPRPTLES NSMIVLFSHI RTGQWSSIMP RNVAESFGFP EEIRMVPIVE PQAQHLVGLV ATHREPYTPL VSALLHEARR LAAAQVFDRF FLSRNNTAVL T
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