| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4098 |
|---|
| Symbol | nuoF |
|---|
| ID | 7388895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3454000 |
|---|
| End bp | 3455556 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643652803 |
|---|
| Product | NADH dehydrogenase I chain F |
|---|
| Protein accession | YP_002550976 |
|---|
| Protein GI | 222150019 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTA CCGTTTTCGT TCCCCGGGAT GCCGCTGCTC TGGCGGTCGG GGCCGATAAG
GTTGCCGCCG CCATAGAGCG TGAAGCTGTG GCGCGCCATG TCGATGTGAC GATCATTCGC
AATGGGTCGC GGGGCATGCT TTGGCTGGAA ACCCTGGTTG AAGTGCGCAC GGACAGCGGT
CGGATCGCCT ATGGTCCGGT CAAGCCTTCT GATGTCGCGG GCCTGTTCGA TGCCGGGTTT
TTGACCGGGG CTGCCCATCC GCTCTGTCAC GGCCTGACCA GCGATATTCC GTTCCTGAAG
AACCAGACGC GGCTGACCTT TTCCCGCTGC GGCATTACTG ATCCGCTGTC GCTGGAGGAC
TATCGGCATT ATAAGGGCCT GACCGGTCTC GCCAAAGCGA TTGCCATGCC GCCCGCCGAC
ATCGTCACGG AAGTCACCGA AAGCGGCCTT CGCGGTCGCG GCGGGGCGGG CTTTCCGACC
GGTATCAAAT GGAAAACCGT GGCGGATGCC AAAGCCGAGC AGAAATACAT CGTTTGCAAT
GCCGATGAGG GCGATAGCGG CACCTTTGCC GACCGGATGA TCATGGAGGG TGATCCCTTC
GTGCTGATCG AAGGCATGGT GATTGCCGGG ATCGCTGTCG GTGCCACCAA GGGCTATGTT
TATACCCGCT CGGAATACCC TCATGCCATC GTCGTGATGC GTGAAGCCAT CGAGATCGCC
CGCAAGCAGG GTATTCTCGG AGCTTCCGTG TTAGGCTCTG CTTACGCTTT CGATATGGAG
GTCCGGGAAG GGGCCGGCGC CTATGTCTGT GGTGAGGAAA CCTCGCTGCT CAACAGCCTG
GAAGGCAAGC GCGGTGTGGT GCGGGCCAAG CCGCCGCTTC CGGCGCTGGA GGGGCTGTTT
GGTAAGCCGA CCGTTGTCAA CAATGTCATG TCGCTGGCCT CCATTCCTGT CATCATGGAC
CGCGGCGCGC AGTTCTACCG CGATTACGGC GTTGGCCGGT CGCATGGCAC CATCCCGATC
CAGATTGCTG GCAATGTCAA ACACGGCGGT CTGTACGAGA CAGCCTTCGG CCTGACACTG
GGCGAGATTA TCAACGATAT CGGCGGCGGC ACCTTGACGG GCCGTCCGGT GAAGGCGGTG
CAGGTGGGCG GACCGCTGGG GGCTTATTTC CCGCCCTCGC TGTTTGATAC GGTGTTCGAC
TATGAAGCCT TTACCGCAGC TGGCGGCTTG ATCGGTCATG CCGGGATCGT GGTCTTCGAT
GACAGCGCCG ATATGCTGAA ACAGGCGCGG TTTGCCATGG AATTCTGCGC GGTCGAAAGT
TGCGGCAAGT GTACGCCCTG TCGGATCGGC TCGACACGCG GCGTCGAAAC GGTGGACCGG
ATCGCCAAGG GTATTGAGCC GGAAAAGAAC AAGGTGCTGC TGGAAGATCT CTGCAACACT
ATGAAATTCG GATCGCTTTG CGCGCTTGGC GGCTTTACGC CCTATCCTGT CATGAGTGCG
ATGACCCATT TCCCGCAGGA TTTTGCGCCT GCCCCCCTGG TTGAAGCGGC GGAGTAA
|
|---|
| Protein sequence | MSITVFVPRD AAALAVGADK VAAAIEREAV ARHVDVTIIR NGSRGMLWLE TLVEVRTDSG
RIAYGPVKPS DVAGLFDAGF LTGAAHPLCH GLTSDIPFLK NQTRLTFSRC GITDPLSLED
YRHYKGLTGL AKAIAMPPAD IVTEVTESGL RGRGGAGFPT GIKWKTVADA KAEQKYIVCN
ADEGDSGTFA DRMIMEGDPF VLIEGMVIAG IAVGATKGYV YTRSEYPHAI VVMREAIEIA
RKQGILGASV LGSAYAFDME VREGAGAYVC GEETSLLNSL EGKRGVVRAK PPLPALEGLF
GKPTVVNNVM SLASIPVIMD RGAQFYRDYG VGRSHGTIPI QIAGNVKHGG LYETAFGLTL
GEIINDIGGG TLTGRPVKAV QVGGPLGAYF PPSLFDTVFD YEAFTAAGGL IGHAGIVVFD
DSADMLKQAR FAMEFCAVES CGKCTPCRIG STRGVETVDR IAKGIEPEKN KVLLEDLCNT
MKFGSLCALG GFTPYPVMSA MTHFPQDFAP APLVEAAE
|
|---|
| |