| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4089 |
|---|
| Symbol | |
|---|
| ID | 7388888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3440709 |
|---|
| End bp | 3444923 |
|---|
| Gene Length | 4215 bp |
|---|
| Protein Length | 1404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643652796 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550969 |
|---|
| Protein GI | 222150012 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2911] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCAC TCAAAACCCT ATTCTCAGGC CTTGGCCGCA TTCTCGCCTA TGGTTTGCTG
GTGCTGGCCG CGATGCTGGT CGTGGCGCTG ACGCTGGTCG GCACAACGCA ATTCGGCAGC
CGGTTCATCG GCGATTTCGT CGCCTCACTG ATGTCGAAGC CAAACCGGAT CATCGCCGTG
GACGGGATCA GCGGCCTGCT GGACGGGCAT TTGCGGGTGG ACACAATCAC CGTTTCCGAC
GCGAACGGTG CTTATGGCCG AATTCAGGAT CTCTCCATCG ACTGGTCGCC GCTGGCGCTG
ATGTCACGCC GTTTCGAGGC CTCGCAGATA AAGGCCGCCT CCTTGACATT GGCCCGCAAG
CCCTTGCCGG CTGAGGAAAC GGCGACAGAA GCCTCCAGCA GCAATGGCTT CAGCCTGCCG
GTGGATATCC GTATCGAGCG GGTGTCCGTG CCAGAGATCC GGCTGGAACA ACCGCTGCTC
GGCACTGCGG CCAAACTGGC TTTGGACGGC AATGTCGAGG CTGAACGAGG CAGTGAAGCG
AACCAGCAAT CCATCACCTC GCAGTTGACG GTGAGCCGTG CAGATCTGCC GCAAGCAAAC
CTGTCGGCCC GGCTCGCCTA CGCGCCGCAG CAGAACCGGC TGGATGTCGA TGCCATCTTG
CAGGAACCGA AAGGCGGAAT CCTCGCAAAC CTGCTGCAAT TGCCGGATGA TCCGGCGCTT
GCCATCACGG TCAAGGGCGG CGGTCCGATC AACGACTGGA AAGGCTCGCT GGCGGCAACG
CTCGACGGCA CACCGCGATT GGACATCACC GCAACCCATA GACTGGCCAC GGACGGTCGC
CATGTGACCA TCAATGGCGA CGGTTCCTTC GATAGCCTGA TGCCCGCCAA TCTCCGCGAC
CTGTTTGCCG GCAAAACCAT GATCGACATT GCCGCCCGTC TTTCCGATGA CGGTGCCTTG
AGCGTGGAAA AAGGCAGCGT CGAGACCGGC AGCCTGTCGC TTGCCGCCAG CGGCACCTAT
ACGCCGAAAG GCGAAAATTC CCTTCACGCT ACACTGACCG GCAAGAATGG CCCTGCCGCG
ATCCGTTGGC CGCTGGACGA TGGCACCCTC GCCGCCCAAG TCTCCGGCCT GACATTCAGC
CTGACCGGGG CTGCCGAAGC GGCAAAGCTT GAAACCACCG CGGCGCTGGC GAGCCTGACA
CTGCCGCAGG GCACGCTTGG CGATATCGCC CTTAAAGCAA GCGCGCCTGC TTTCAACCTG
ACCACCCGTT CCGGCAGCAT CGATACCACA CTGACCGTAC AGCAAGCGCA GTTGACGGAC
CCGACGCTGG CGCGCGCCAT AAAGGCGCCC CTGACCCTTA AGGCCCCGAT TGCGGTCAGC
CCTCAGCAGA TTACCGCCCA ACCGCTCACC ATCGAAAGCC CGGCGCTTGG CGGCAGCGTG
ACGGCTGCCT ATACCATCGC CAGCAAGGCC GTGGAGGCAC AATATACACT GTTTGCGCGG
CCTGAAGCGC TGCCACAAGC CGTGACGGAA AAGCTGTTGG GAACGCCTGG TGGCACCGAG
CAAACCAATA TGGTGAAGCT TTCCGGCGAG GCACGCTATT CCGCAGGTGA TGGAATTGTC
ATTCCCGGTT TTACGCTGGA AACACGGCTG CTGAACGCTT CGGGCAAACT GTCTTTTGTC
AGGCAGCAGC TGGCCACCAC ACTCTCGGGG ATGATCACCG ATCTCAGCAT CTTGCAAGCC
AATGCATCGG GAAAGGCGGC ATTCGAACTC CAGGCCGATG GCCCGATCAA TGCCTTGCGG
ACCAATGGCA CCCTCACCAT CAACGCCGCA AAGCTTGCTG GTCGCGCCCT CACCGGCTTT
TCCATGGCGG CGAAAGCCGA CCTGACACGC GGCGCGCCCT CTGCAACGCT GACCGCGCAA
GGCGCGCTGG ATGGCAAGCC AGTGCGCTCC AATCTCAACC TCACCTCCAA GGACGGCGTC
ATCGCACTGC CGGATCTGAG CTTGACGGTG GGTGACAACC GCTTGAACGG CGCCTTGAAC
TTTTCCCGTG CGCTGCTTCC CAGCGGTTCT GTCGATTTTG ACTTTCCCGA TCTCGGCCTG
CTGGCCGCCC TTGGCGGACA GACCGCATCG GGCGATCTGA AAGGCTCCAT CAGACTGGAC
GAGGCCAATG GCAAGATTGC CGCCCGGATC AAGGCCGAGG GCACTGCCAT TCGCCAGGGC
ACGACAACAA TCGCGCAGCC GTCGGTCGAT GTGACCACCA ACGACCTCCA ATCGCTGGCC
TTGCAGGGCA TGGTGAAGGC GGACCGGATC TCCACTGGCT CTGCCCTTGT GGAACAGCTG
GCGCTTCAGT TCGACCGGAG AGGAACCCGC ACCGATATCG ACCTTTCAGG ACGATATGAC
AATGCACCTT TGACCGGAAA AGCACTGGTG CAGCAGGATG GCAATAGCAT CGGCATTGCC
CTTCAGGATT TTGCCGTCAG CCCACGCGGC ATCGCCATAA CGCTGGCCCG GCCCACTGAC
ATCACCGTGG AAAATGGCAC GGCAACAATC GACACGCTCA CTATCAAAGC TGGCAGCGGT
ACAGTTTCGG TTGCTGGCAA GGCAGGCGCG GTTCTGGATA TGACAGCGCA GATCAACGCG
CTCCCCGCCT CGCTTGCCAA TACATTTTCG GCCAATCTGG GCGCGACCGG CACACTCTCC
GGCAAGATCA CCGCCACCGG CAGCACATCC GCGCCGAAGA TCGCGTATGA CCTGCGCCTC
GATGATGCCA GCGTCACGCA GATGCAGTCC GCTGGCCTGC CACCTCTGGC GATTACCGCC
TCCGGCACCT TTGCGGACAA TCGCCTGTCC GTGGACAGCC GCGTGACCGG CGGCGGTGGT
CTGAATGTCA CAGGCGGCGG CTCGCTGACG CTAGCAGGCG ACAAACCCAT CAACATGGCG
TTCAAGGCCA ATCTGCCGCT CAACGCATTG CAGGGCCTGT TGACCAAGCA AGGATTGACG
GCAGAAGGCA ATGCCAATGG CGATATCCGC ATTGGCGGCA CCCTGTCCTC CCCGGCGTTA
TCCGGTACCA TCAGCACGGC CAAGGCCCGG CTGATTGATG TGAAACACAA TATCGCTCTT
GAGCAATTGG CCGTGGACAT TGCCTTGACC GGCGATCAGG CCCGGATCAA CTCCGCAACC
GGCAGGATTT CCGCCGGAGG CAGAGTGTCG GCGACCGGCA CGATCGACCT GAAAGGTCAG
GGATTGCCCA GCGACCTGAC AATCAAGCTC GACAACGCCA TCTACATCGA TGGTACCTTG
GTCACCGCGA CCGTCAACGG CAGCATGGGG TTGAAAGGCC CCTTGCTGGA TGGACCGACC
CTGTCCGGCA AGCTGACACT GGACAAGACC TCAATCACCA TTCCGTCCCG GCTGCCGGGA
TCGATTGCCC AACTCGACAT CAAGCACAAG AACGCTCCGG CCGACGTGCG CCGCCAAACG
GCAATTCTCA ATCCAGAGAA AACGGGGGAT GGCAGTAGCT CGCCGATTCT GCTCGATCTG
CAAATCGCGG CACCCTCGCA AATCTTCGTG CGCGGACGCG GAATCGACGC AGAACTGAAC
GGCACCGTGA GCATCAAGGG CAGTATCGCA GCACCGCAAG TCTCGGGTGG CTTCACCATG
CGTCGGGGCC GGATGGTCAT TCTCACCAAG CGGCTGGATT TCAGCTCAGG CAAAATTACC
TTTAGCGGTG GCCTTATCCC AGTCGTCGAC TTCGAGGCTA CCAGCACATC AGGCAGCACG
ACGCTGACAG CCAAGGTATC CGGCGTGGCG ACCGACCCGG ATATCAGCTT TTCATCCGCC
CCCGCCCTGC CGCAGGACGA GGTCCTCGCC CAGCTTATTT TCGGCCAGTC GATGGCGAAA
CTGTCGCCGC TGCAAATTGC TCAATTGGCG GATGCCGTCG GTCAGTTGGG CGGTGGCAAT
TCGACATCGC TGTTCAACAG TCTTCGCAGC GCCGTTGGCG TTGACGATCT CGACATCAGC
ACCGATTCCA AGGGCAATAC CCAGTTCAGC GCCGGAAAAT ATCTGAACGA CAAAACCTAT
CTCGAATTCC AGCAGGGCAG CACCGGCAGC AAGGCCGTGA TCAACCTGGA TGTCGGTCGT
GGCTTCAAGC TGAAAGGCGA GGCTGGCGCC AGTGGATCGA GCGGCGGCGG TGTGTTCTAT
GAGAAAGAAT ACTAG
|
|---|
| Protein sequence | MSALKTLFSG LGRILAYGLL VLAAMLVVAL TLVGTTQFGS RFIGDFVASL MSKPNRIIAV
DGISGLLDGH LRVDTITVSD ANGAYGRIQD LSIDWSPLAL MSRRFEASQI KAASLTLARK
PLPAEETATE ASSSNGFSLP VDIRIERVSV PEIRLEQPLL GTAAKLALDG NVEAERGSEA
NQQSITSQLT VSRADLPQAN LSARLAYAPQ QNRLDVDAIL QEPKGGILAN LLQLPDDPAL
AITVKGGGPI NDWKGSLAAT LDGTPRLDIT ATHRLATDGR HVTINGDGSF DSLMPANLRD
LFAGKTMIDI AARLSDDGAL SVEKGSVETG SLSLAASGTY TPKGENSLHA TLTGKNGPAA
IRWPLDDGTL AAQVSGLTFS LTGAAEAAKL ETTAALASLT LPQGTLGDIA LKASAPAFNL
TTRSGSIDTT LTVQQAQLTD PTLARAIKAP LTLKAPIAVS PQQITAQPLT IESPALGGSV
TAAYTIASKA VEAQYTLFAR PEALPQAVTE KLLGTPGGTE QTNMVKLSGE ARYSAGDGIV
IPGFTLETRL LNASGKLSFV RQQLATTLSG MITDLSILQA NASGKAAFEL QADGPINALR
TNGTLTINAA KLAGRALTGF SMAAKADLTR GAPSATLTAQ GALDGKPVRS NLNLTSKDGV
IALPDLSLTV GDNRLNGALN FSRALLPSGS VDFDFPDLGL LAALGGQTAS GDLKGSIRLD
EANGKIAARI KAEGTAIRQG TTTIAQPSVD VTTNDLQSLA LQGMVKADRI STGSALVEQL
ALQFDRRGTR TDIDLSGRYD NAPLTGKALV QQDGNSIGIA LQDFAVSPRG IAITLARPTD
ITVENGTATI DTLTIKAGSG TVSVAGKAGA VLDMTAQINA LPASLANTFS ANLGATGTLS
GKITATGSTS APKIAYDLRL DDASVTQMQS AGLPPLAITA SGTFADNRLS VDSRVTGGGG
LNVTGGGSLT LAGDKPINMA FKANLPLNAL QGLLTKQGLT AEGNANGDIR IGGTLSSPAL
SGTISTAKAR LIDVKHNIAL EQLAVDIALT GDQARINSAT GRISAGGRVS ATGTIDLKGQ
GLPSDLTIKL DNAIYIDGTL VTATVNGSMG LKGPLLDGPT LSGKLTLDKT SITIPSRLPG
SIAQLDIKHK NAPADVRRQT AILNPEKTGD GSSSPILLDL QIAAPSQIFV RGRGIDAELN
GTVSIKGSIA APQVSGGFTM RRGRMVILTK RLDFSSGKIT FSGGLIPVVD FEATSTSGST
TLTAKVSGVA TDPDISFSSA PALPQDEVLA QLIFGQSMAK LSPLQIAQLA DAVGQLGGGN
STSLFNSLRS AVGVDDLDIS TDSKGNTQFS AGKYLNDKTY LEFQQGSTGS KAVINLDVGR
GFKLKGEAGA SGSSGGGVFY EKEY
|
|---|
| |