Gene Avi_4083 details

Gene Information

• Locus tag: Avi_4083
• Symbol: dxr
• ID: 7388883
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3433799
• End bp: 3434992
• Gene Length: 1194 bp
• Protein Length: 397 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643652791
• Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• Protein accession: YP_002550964
• Protein GI: 222150007
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• TIGRFAM ID: [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATACCG CCACGTCCCA GCCCCGCCGC CTCACCATTC TGGGGTCGAC CGGCTCTATC 
GGAACCAACA CGCTTGACGT GATCAGACAA ATGGGCGGAC GCGATCGCTT CGACATCATG 
GCCCTGACAG GGCACGGCAA TGTCGCTCTT CTGGCGGAGC AGGCACTGGT GACAGGCGCA 
AGGCTGGCAG TTACCTCTGA TGAAAATCAA TATATTGCCT TGAAAGACCT GTTATCGGGC 
AGCGGCATCG ATGTTGCAGC CGGCAGCAGC GGGCTACAGG AAGCAGCATG CCTTGAGGCG 
GACTGGGTGA TGGCCGCCAT TGTCGGGACC GCCGGTTTGC AGCCAACCTT GACAGCCGCC 
GCACGCGGCG CCGATATCGC GCTGGCCAAT AAGGAATGCC TCGTTTCGGC TGGCGAATTG 
TTCATCGAGA CGGTGCGTAA GGGCGGCGGC AAGATTATCC CCGTCGATAG TGAGCATTCG 
GCAATTTTCC AATGCCTGGA CGAAAATCAC CGTGACACGC TGGAGCGGAT TGTGCTGACG 
GCTTCTGGCG GGCCGTTTCG CACCTTCACC CGCCAACAGA TGGCTGATGT CAGTGTTCAA 
ACCGCCCGCG CCCATCCGAA TTGGTCCATG GGACTGAAGG TGTCGATTGG CAGCGCCTCG 
ATGTTCAACA AGGCGCTGGA GATGATCGAG GCCAAGCACC TGTTCGATCT GACACCCGAC 
CAGATCGAGG TTATCGTCCA TCCTCAATCG ATCATCCACT CCATGGTGGG CTATAGCGAC 
GGCTCCGTGC TGGCCCAGCT TGGCGTACCG GATATGCGCA CCGCCATCGG TTATGCGCTG 
AGCTATCCGA AACGCGCGGC GCTGGATGTG GACCGGTTGG ATTTTACCAA GCTGGCGCGG 
CTGGATTTCG AAGCGCCGGA CCTGGACCGT TTTCCGGCCA TCCGTCTCGC CCGTACAGCG 
CTTGAGCGCG GCGGCTTGCA GGGCGCCGTG CTGAACGCCG CCGAAGAATG TGCCTTTGAG 
GCTTTTGTCG AGGAAAAAAT CGGTTTTCTC GCCATGGCCG ATGTGGTCGA GGATGTCATG 
GATCATCTAT CGGGCTTGGC ACCGGCGACC GTGATTGCCG ATGTCTTTGC CGCCGATGCG 
CAGGCACGAC GCCGAGCCCA AGAGGTCATC CTGAACCAAG GCCGCACGCG ATAA 

 

Protein sequence

MNTATSQPRR LTILGSTGSI GTNTLDVIRQ MGGRDRFDIM ALTGHGNVAL LAEQALVTGA 
RLAVTSDENQ YIALKDLLSG SGIDVAAGSS GLQEAACLEA DWVMAAIVGT AGLQPTLTAA 
ARGADIALAN KECLVSAGEL FIETVRKGGG KIIPVDSEHS AIFQCLDENH RDTLERIVLT 
ASGGPFRTFT RQQMADVSVQ TARAHPNWSM GLKVSIGSAS MFNKALEMIE AKHLFDLTPD 
QIEVIVHPQS IIHSMVGYSD GSVLAQLGVP DMRTAIGYAL SYPKRAALDV DRLDFTKLAR 
LDFEAPDLDR FPAIRLARTA LERGGLQGAV LNAAEECAFE AFVEEKIGFL AMADVVEDVM 
DHLSGLAPAT VIADVFAADA QARRRAQEVI LNQGRTR