| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4077 |
|---|
| Symbol | cheA |
|---|
| ID | 7388879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3428355 |
|---|
| End bp | 3430343 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643652787 |
|---|
| Product | Chemotaxis protein histidine kinase |
|---|
| Protein accession | YP_002550960 |
|---|
| Protein GI | 222150003 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAGT CGGCCGACGT GCTCGCCGAC CTGACCAATG CTTCTCGTGA CGGCGGCAGC
GTCGATCCGT CTCGTTCAAG CGGCCTTGTC AAGGAATTGG AAGCGCTTGC CAAGGGTGAA
GTACCTTCGT CGTCATCCGC CACAGCGGCA GCACCCGCTC CAAAGGCGGC TGCCAAGCCT
GCACCTGCGC CAGCAGCGAC GGATGACAGC GGTTTTGCAC CCGTTCCATT CTCCTTTGAC
GATTTTGCCG ACGAAGAGCC TCCCATTGTG TCTCCTCCGC TTGAAGTGAG CTTCAAGCCG
CGCCGGGATC TCTACGCCAA GGGCAATGAC GCCACGCTTT TGCTGCGTGA TCTGTCGCGC
ATCGGCGAAG TCAGCCTGAA CTGCAACGTA AGCGCCGTTC CGACGCTGGA ATCCATGGAT
CCTGAGGAGG CCTACTTCTC CTGGAAGATC CTGGTGAAGA GCGAAAAAGG CGAAGAAGGC
GTTCGGACTG TTTTCGAGTT TGCCGAATGG GATTGCGAAC TGGAAATCAA GGAACAGGAA
GCGACTGTTG CTGAAGGGAG CGATGAGCTG CCGATGGTAC CGGTGCCGTT CGATCTGTCC
GCGCTGGACG ACGATAGCGG CGTTGAAGAG GCTGACGATA GCTCGGCCGA CTTGATTGCC
GAGGCCGTGG AAGCCGCCGA TACGGCAACC AAAGTGGTCA GTGCCGTCAG GGAGAAGAGA
GAATCTCCAG CCGCTGCTGC CGCCGCTGCC GCTGCGCAAA ACCAGTCCGC AGCTTCTGCT
GCCGGGCAAA CGATCCGCGT CGATCTCGAT CGCGTCGACC GCCTGATCAA CCTGGTGGGC
GAGCTTGTCA TCAACCAGGC CATGCTGTCG CAGAGCGTCA TCGAAAATGA CACCAACGGC
ACGTCGTCGA TCAATATGGG CCTCGAAGAG CTGCAACAGC TCACCCGTGA GATCCAGGAT
TCGGTCATGG CGATCCGTGC TCAGCCGGTC AAGCCGGTGT TCCAGCGCAT GTCGCGTATC
GTGCGCGAAG TTGCTGATAT GGTTGGCAAA TCGATCCGTC TGGTCACCGA AGGTGAAAAC
ACTGAAGTGG ACAAGACGGT CATCGACAAG CTGGCCGAAC CGCTGACCCA CATGATCCGA
AATGCCGTTG ACCATGGTAT TGAAACCCCC GAAAAGCGTA GTGCCGCCGG CAAGAACCCG
GAAGGCACGG TCAAGCTGAC GGCAAAGCAC CGGTCTGGCC GTATCGTGAT CGAACTGGTC
GACGATGGCG CCGGTATCAA CCGCGAACGG GTCCGCCAGA AGGCAATCGA CAACGATATC
ATCGCTGCCG ACGCCAATCT GTCCGACGAG GAAATCGACA ATCTGATTTT CATGCCGGGC
TTTTCGACGG CGGACAAGAT TTCCGACATT TCCGGCCGTG GCGTTGGCAT GGACGTGGTC
AAGCGGTCCA TCCAGGCCTT GGGCGGGCGC ATCTCCATCA GTTCGCGCCC CGGTCAGGGC
TCGACCTTCA CCATGAGCTT GCCGCTGACA CTGGCGGTTC TGGATGGCAT GGTCGTTACC
GTTGCTGGCC AAACGCTTGT CGTTCCTTTG ACGGCCATCG TTGAGACCTT GCAGCCGGAA
GCCCAGAATA TCCATTCCTT CGGGGCCAAC CAGCGGCTGA TTTCGATCCG CAACAGCTTC
TGCCCATTGG TGGATGTCGG TCGGATCCTG AATTTCCGGT CAGTCCAGGC CAACCCGATC
GATGGTGTTG CTCTGCTGGT GGAATCGGAA GGTGGCGGTC AGCGCGCCTT GATGGTCGAT
GCCATCCAGG GTCAGCGCCA GGTGGTCATC AAGAGCCTCG AGGCTAACTA TACGCATGTG
CCCGGCATCG CCGCGGCAAC CATTCTGGGC GATGGCCGCG TGGCTCTGAT CTTGGATGTG
GATGCTGTCG TCGCTGCCTC GCGCGGTCAG TCTCTCAAGC AGGAAATGTC GTTAGCCGTC
GCAGGATAG
|
|---|
| Protein sequence | MLKSADVLAD LTNASRDGGS VDPSRSSGLV KELEALAKGE VPSSSSATAA APAPKAAAKP
APAPAATDDS GFAPVPFSFD DFADEEPPIV SPPLEVSFKP RRDLYAKGND ATLLLRDLSR
IGEVSLNCNV SAVPTLESMD PEEAYFSWKI LVKSEKGEEG VRTVFEFAEW DCELEIKEQE
ATVAEGSDEL PMVPVPFDLS ALDDDSGVEE ADDSSADLIA EAVEAADTAT KVVSAVREKR
ESPAAAAAAA AAQNQSAASA AGQTIRVDLD RVDRLINLVG ELVINQAMLS QSVIENDTNG
TSSINMGLEE LQQLTREIQD SVMAIRAQPV KPVFQRMSRI VREVADMVGK SIRLVTEGEN
TEVDKTVIDK LAEPLTHMIR NAVDHGIETP EKRSAAGKNP EGTVKLTAKH RSGRIVIELV
DDGAGINRER VRQKAIDNDI IAADANLSDE EIDNLIFMPG FSTADKISDI SGRGVGMDVV
KRSIQALGGR ISISSRPGQG STFTMSLPLT LAVLDGMVVT VAGQTLVVPL TAIVETLQPE
AQNIHSFGAN QRLISIRNSF CPLVDVGRIL NFRSVQANPI DGVALLVESE GGGQRALMVD
AIQGQRQVVI KSLEANYTHV PGIAAATILG DGRVALILDV DAVVAASRGQ SLKQEMSLAV
AG
|
|---|
| |