| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4068 |
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| Symbol | fliF |
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| ID | 7388872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3422372 |
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| End bp | 3424078 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652780 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_002550953 |
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| Protein GI | 222149996 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.979947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACGGTGC GAGACAGAAT GAATCTGTTC AATCAACTAC TCCAGGTCTT CAAGAACCTT
TCGTCCTTGG GACCGACTAA ACTATGGACC CTTGCGGGTG TTGGCGTCGT TTCGGTGGCG
CTGGTTATCG GTGCGGCGTT TTTTATCAAT AAGCCTGCCT TTGAGACCCT TTACGTTGGC
CTCGAAGCGA CAGACGTCAA TCAAATCAGT ATTGCGCTGG CTGAAGCGGG CGTCGGTTTC
CAGACTGGCG CCGATGGCAA GAGCATTCAG GTCCAGGCCG GAATGACCGG CAAGGCCCGT
TTGTTGCTGG CCGAACGCGG CCTGCCCAAT AGCACCAATG CGGGCTATGA ACTGTTCGAC
AATGTCGGCT CCCTGGGTCT GACATCCTTC ATGCAGGAAG TGACTCGGGT GCGCGCCCTT
GAGGGCGAGA TTGCCAGGAC GATCCAGCAG ATCAACGGTA TTGCGGCAGC CCGCGTGCAT
ATCGTCATGC CGGATGTCGG GAATTTCCGG CGCGGCGCGC AGAAGCCAAC GGCCTCGGTG
ATGATCAGAG CCGGCTCCGA TGCCGGTCGC AAATCTGCGG CTTCGATCCG CCATCTGGTG
GCTTCGGCTG TGCCGGGTCT TGAAATCGAT GATGTCACCA TTCTGGATTC GACCGGCCAG
TTGCTGGCAT CGGGCGATGA GACGGGCGGG GCTGCAAACC GGAATCTCGG CGTTGCCCAG
TCGGTTCAAC AGGAAATCGA ATCGAACATC GACAAGGCGC TCGCACCTTT CCTCGGTATG
GACAATTTCC GCTCCAGCGT TACGGCGCAG TTGAATACCG ACCAGCAGCA GATCCAGGAA
ACGGTCTACG ATCCCGAATC CAAGGTCGAA CGCTCGACCC GCACCACCAA GGAAGCGCAG
AAGTCGCAGC AGCGGCAATC CGATACCGCA GCGACTGTGG AGCAGAATAT TCCACAGGCC
GCTCCGCAAG CGGGCGGTGC TGGTCCTGAA TCGTCCGACC AGCAGGACAA GAAGGAAGAG
CAGACCAACT ACGAAATCAA CAGCAAGACG ATTGCCACCG TCAAGAACGG CTATACGCTG
GACAAGCTTT CCGTGGCCGT TGTGGTCAAC AAGCAGCGCA TCGCCACCAT GGTCGGCGAG
CCGGTCGATC AGGCCAAGAT CGATGCCTAT CTGGCGGAAA TGCAGAAGAT CGTCAAATCG
GCTGCCGGGC TCGATGACAA GCGTGGCGAC GTGGTGACGC TGACGGCGAT GGACTTCCTG
GAGAATCAGC TGCTGAGCGA GGCACCAACC GGACCCGGTG TGATGGAAAT CCTCAGCCGC
AACATGGCGG GTATTATCAA CTCGCTTGCC TTCCTCGCCG TTGCTTTCCT TGTTGTCTGG
ATGGGCATTC GTCCGATGGT ACGCTCGATG GGCGGCGGTG GAACTGCGGC GCTTGAGGGT
GGCAGCGACG CTGTTGCCGG ACTGGAACTG CCCGACTTCT CGCCCGGTCT TGATGCCGGT
GCCGGCGGCG GCCTGATGGA TGGCTTTGGT TCCGATTTCG GCTTCGATAG CGCCGATGAT
GTCCTTGCCC TCGACAATGA CCCGAATGGC GGCTTCAACC GTCGCGTCAA GGAAGGCCCG
GAACGGCGCC TGGCGCGTAT GGTGGAAATC TCGGAAGAGC GCGCTGCCAA GATCCTGCGC
AAATGGGCGG TCGAGAACGC AGCCTGA
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| Protein sequence | MTVRDRMNLF NQLLQVFKNL SSLGPTKLWT LAGVGVVSVA LVIGAAFFIN KPAFETLYVG
LEATDVNQIS IALAEAGVGF QTGADGKSIQ VQAGMTGKAR LLLAERGLPN STNAGYELFD
NVGSLGLTSF MQEVTRVRAL EGEIARTIQQ INGIAAARVH IVMPDVGNFR RGAQKPTASV
MIRAGSDAGR KSAASIRHLV ASAVPGLEID DVTILDSTGQ LLASGDETGG AANRNLGVAQ
SVQQEIESNI DKALAPFLGM DNFRSSVTAQ LNTDQQQIQE TVYDPESKVE RSTRTTKEAQ
KSQQRQSDTA ATVEQNIPQA APQAGGAGPE SSDQQDKKEE QTNYEINSKT IATVKNGYTL
DKLSVAVVVN KQRIATMVGE PVDQAKIDAY LAEMQKIVKS AAGLDDKRGD VVTLTAMDFL
ENQLLSEAPT GPGVMEILSR NMAGIINSLA FLAVAFLVVW MGIRPMVRSM GGGGTAALEG
GSDAVAGLEL PDFSPGLDAG AGGGLMDGFG SDFGFDSADD VLALDNDPNG GFNRRVKEGP
ERRLARMVEI SEERAAKILR KWAVENAA
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