| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4056 |
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| Symbol | xerD |
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| ID | 7388862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3411091 |
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| End bp | 3412089 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652769 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_002550943 |
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| Protein GI | 222149986 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.111498 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGATC TCGGCCACGC CCGTATCGAA GCTTTCCTTG AGATGATGAG CGCCGAGCGC
GGTGCGGCGG GCAATACGCT CTCTTCCTAT GAACGGGATC TGGAAGATTT GCATGGCTTT
CTGGCCACGC GCAAAGTCAG CGTCATGGCC GCCACCAGCG ACGACCTCTC CGCCTATCTG
GCCGATCTTG GCCATCGCGG TTTCGAAGCC TCCTCCCAGG CCCGCCGGCT GTCGGCGCTT
CGGCAATTCT ACAAGTTTCT CTATGCCGAG GGACTGCGCG GCGACGATCC GACCTCGATC
CTCGATACCC CGAAAAAGGG CCGGCCTCTG CCCAAGACCC TGTCGATTGC CGATGTCGAC
AAGCTCCTGT CCCTGGCCCA GGCCGAGGCG GCGTTGGACG GCCCAGACCG CCTGCAAAGG
CTGCGGCGCC TGGCGCTGCT GGAGCTTCTT TATGCGACGG GCATGCGTGT CAGCGAACTG
GTCTCGCTTC CGGCCAATGT GCTTGCGCAG GAGGGCCGGT TCCTGGTGAT CCGCGGCAAG
GGCAACAAGG AACGGCTGGT ACCGCTGTCG CGCTCTGCCA TCGCCGCCAT GCAGGTTTAC
GCGCAGGCCA AGGAAATCGA ACAGGCAGAA AAACCACCTT CGAAAAAAAC AGCGTCGAAA
CAAACAGAGT CGAAACTGGG AAAATCATCG GGCATTGGCT TCCTGTTTCC AGCCGCCAGC
CGTGAAGGCT ATCTGCCCAG GCAGGTTTTC GCGCGGGAAT TGAAAGATTT GGCCATTCGC
GCCGGCCTCA GCGGCGATGC GGTGTCGCCG CATGTGCTCA GGCATGCTTT TGCCAGCCAT
TTGCTCGAAA ACGGCGCGGA TCTGCGTGTT GTGCAGGAAT TACTGGGACA TAGCGACATT
TCGACGACGC AAATCTACAC GCATGTGCTC GAAGAAAGGC TCCAGATTCT GGTTGAGACA
CATCACCCTC TTGCAAAACA TAGGAAAAAC CACGATTAG
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| Protein sequence | MVDLGHARIE AFLEMMSAER GAAGNTLSSY ERDLEDLHGF LATRKVSVMA ATSDDLSAYL
ADLGHRGFEA SSQARRLSAL RQFYKFLYAE GLRGDDPTSI LDTPKKGRPL PKTLSIADVD
KLLSLAQAEA ALDGPDRLQR LRRLALLELL YATGMRVSEL VSLPANVLAQ EGRFLVIRGK
GNKERLVPLS RSAIAAMQVY AQAKEIEQAE KPPSKKTASK QTESKLGKSS GIGFLFPAAS
REGYLPRQVF ARELKDLAIR AGLSGDAVSP HVLRHAFASH LLENGADLRV VQELLGHSDI
STTQIYTHVL EERLQILVET HHPLAKHRKN HD
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