Gene Avi_4053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_4053 
SymbolaroK 
ID7388860 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp3409956 
End bp3410549 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content60% 
IMG OID643652767 
Productshikimate kinase 
Protein accessionYP_002550941 
Protein GI222149984 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.477248 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCACT CGATGCCCCA TGCTGTTCTA CCTCTTGCTG AGCGTGCCCG CTCGGTGCTC 
GGGCGTCGAA ACCTGATTTT CGTCGGCCTG ATGGGGGCTG GAAAATCCGC GATCGGGCGT 
CTCGTGGCCC AGCAATTGAA TCTGCCGTTC ATCGATACCG ATACCGAGAT CGAGCGGGTC 
TCGCGCATGA CGATCAGCGA ATTGTTCGCA GCCTATGGCG AGACGGAATT CCGGGCGCTG 
GAAACCCGGG TGATCCGGAG GCTGCTCAGG TCCGGGCCGA AAGTGGTCTC GACCGGCGGC 
GGCGCCTTCA TCAATGACCG GACCCGCAGG CAGATCGAGC GTGGTGGTAT TTCCATCTGG 
CTGAAAGCCG ATCTGGATGT GCTGTGGGAG CGGGTCAACA AGCGCGATCA TCGCCCGCTG 
TTGAAAACCG AACACCCGAA ACAGACGCTG GAAAAGCTGA TGCTGGAGCG CTACCCGATC 
TACCAGCGTG CCGATATTAC CGTATTGTCG CGCGATGGGC GCAAGGAAGC CATCTCCGCT 
GAGATCATGG ACGCGGTGAT CGCCTATGTC AGCAAAGGCA GGAGCAAGCG ATGA
 
Protein sequence
MTHSMPHAVL PLAERARSVL GRRNLIFVGL MGAGKSAIGR LVAQQLNLPF IDTDTEIERV 
SRMTISELFA AYGETEFRAL ETRVIRRLLR SGPKVVSTGG GAFINDRTRR QIERGGISIW 
LKADLDVLWE RVNKRDHRPL LKTEHPKQTL EKLMLERYPI YQRADITVLS RDGRKEAISA 
EIMDAVIAYV SKGRSKR