| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4045 |
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| Symbol | cobT |
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| ID | 7388855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3404768 |
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| End bp | 3406669 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652762 |
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| Product | cobaltochelatase CobT subunit |
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| Protein accession | YP_002550936 |
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| Protein GI | 222149979 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4547] Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) |
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| TIGRFAM ID | [TIGR01651] cobaltochelatase, CobT subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.439387 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGGTC GCGGCGATAA TTCCCAGGCG AAACCCGGCA CGGCGGTCGA TACCGAACCG
TTGCGCCGGG CGATTACCGG CTGCGTGCGC TCGATTGCCG GCGATGCCAA TGTCGAAGTG
GCTTTTGCCA ATGATCGTCC GGGCATTGCC GGTGAGCGGA TTCGCCTGCC GGAAATTTCC
AAGCGTCCCA CCGCCCATGA ACTGGCGGTG ACGCGGGGTC TTGGCGATTC CATGGCGCTG
CGGCTCGCCT GCCATGACCA GAAAGTCCAT GCCTCGATGG CACCGGAGGG GCAGGATGCC
CGCTCGGTAT TCGATGCGGT CGAACAGGCC CGGGTGGAAT CGATCGGTGC CTTGCGGATG
ACCGGCGTTG CCGCCAATCT GAAATCGATG ACCTCGGAAA AATATGCTAA GGCCAATTTT
TCCGGCATCG AACGGCGCGA GGATGCGCCG CTGTCGGAAG CGGTGGCGAT GATGGTGCGT
GAGGCGCTGA CCGGTCAGAA GCCACCGGAA AGTGCCGGTA AAGTGCTGGA TCTGTGGCGC
TCCTTCATCG AGGAAAAGGC CAGCAGTGAT TTTTCCAATC TGGCCAATGT GATTGAGGAC
CAGCAGGCCT TTGCTCGCGT TGTGCGGCAT ATGCTGTCTT CGATGGAAAT GGCCGAGGAT
TTCGGCGAGG ACCCGGAACA GGCCGAGCAG GAAGAAACCT CGGAAGAAGA CCAGCAGCGC
AGCGGCGAGG AAGAGCAGGA AAATTCCGAG CAGGAAGCCG GCTCTGAAAG CGCGCCCGCC
GATGAAAGCG AATCTGCCGA AGAGCAGATG GACGACGGCG AGATGGACGG TGCCGAAATT
TCCGACGACG ATATGTCAGA GGAAGGCGAC GAAGACAGCG AGACTCCCGG TGAAATGCGC
CGTCCGGCTA GCCCGTTCGA CGATTTCAAT GAAAAAGTCG ATTACAAGAT GTTTACCGAG
GCCTTCGATG AGGAGACTTC GGCGGAAGAG CTGTGCGATG AAGCCGAACT TGACCGGTTG
CGCGCCTTTC TCGACAAGCA GCTTGCCCAT CTCCAGGGTG CGGTCGGCCG GTTGGCCAAC
CGCTTGCAGC GCCGGTTGAT GGCGCAACAG AACCGGTCCT GGGATTTCGA TCTGGAAGAG
GGCTATCTCG ATCCGGCCCG GTTGACCCGG CTGATTATCG ATCCGATGCA GCCGCTGTCG
TTCAAGCGGG AAAAGGACAC CCAGTTCCGC GATACGGTGG TGACGCTGGT TATCGACAAT
TCCGGCTCGA TGCGTGGGCG TCCGATTACG GTTGCCGCCA CCTGCGCCGA TATCCTGGCC
CGCACATTGG AGCGCTGCGG CGTCAAGGTG GAAATCCTTG GCTTTACCAC CAAGGCCTGG
AAGGGCGGCC AGAGCCGCGA GCAATGGTTG GCCAGCGGCA AGCCGCCGAC GCCGGGCCGC
CTCAACGACT TGCGCCATAT CGTCTATAAA TCGGCGGATG CGCCGTGGCG GCGGGCACGG
CGCAATCTCG GCCTGATGAT GCGCGAAGGC CTGCTCAAGG AAAATATCGA CGGCGAAGCG
CTGATCTGGG CGCATAATAG GCTGTTGGCG CGGCGCGAAC AGCGCAAGAT CATGATGATG
ATTTCCGATG GTGCGCCGGT GGACGATTCG ACCTTGTCGG TTAATCCCGG CAATTATCTG
GAACGGCATT TGCGCGCTGT GATCGAGCAG ATCGAGACCC GGTCTCCGGT CGAATTACTG
GCGATCGGCA TCGGCCATGA CGTCACCCGC TACTATCGCC GTGCCGTCAC CATTGTCGAT
GCGGATGAAT TGGCAGGTGC GATGACCGAG CAATTGGCTG GCCTCTTCGA AGACAAGCCC
ACTAAGGGTG CCCGTGGCGG TTCGTTCCGC CGCGCCAGCT GA
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| Protein sequence | MAGRGDNSQA KPGTAVDTEP LRRAITGCVR SIAGDANVEV AFANDRPGIA GERIRLPEIS
KRPTAHELAV TRGLGDSMAL RLACHDQKVH ASMAPEGQDA RSVFDAVEQA RVESIGALRM
TGVAANLKSM TSEKYAKANF SGIERREDAP LSEAVAMMVR EALTGQKPPE SAGKVLDLWR
SFIEEKASSD FSNLANVIED QQAFARVVRH MLSSMEMAED FGEDPEQAEQ EETSEEDQQR
SGEEEQENSE QEAGSESAPA DESESAEEQM DDGEMDGAEI SDDDMSEEGD EDSETPGEMR
RPASPFDDFN EKVDYKMFTE AFDEETSAEE LCDEAELDRL RAFLDKQLAH LQGAVGRLAN
RLQRRLMAQQ NRSWDFDLEE GYLDPARLTR LIIDPMQPLS FKREKDTQFR DTVVTLVIDN
SGSMRGRPIT VAATCADILA RTLERCGVKV EILGFTTKAW KGGQSREQWL ASGKPPTPGR
LNDLRHIVYK SADAPWRRAR RNLGLMMREG LLKENIDGEA LIWAHNRLLA RREQRKIMMM
ISDGAPVDDS TLSVNPGNYL ERHLRAVIEQ IETRSPVELL AIGIGHDVTR YYRRAVTIVD
ADELAGAMTE QLAGLFEDKP TKGARGGSFR RAS
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