Gene Avi_4001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_4001 
Symbol 
ID7387335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp3370597 
End bp3371154 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content54% 
IMG OID643652726 
Producthypothetical protein 
Protein accessionYP_002550900 
Protein GI222149943 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACGATTG CAGTTTCGCC CCAGTCCTTA CCAGCGCTTG TGCTCAACGC TGATTATAGG 
CCACTGAGTT ATTATCCCTT GTCGTTGTGG TCCTGGCAGG ACGCGATCAA GGCGGTTTTC 
CTTGACCGTG TGAATATCAT CGCCGAATAC GATCATTCGG TCTGTTCACC CAGCTTTTCT 
ATGCGGCTTC CCAGCGTGGT CAGCCTGAAA ACCTATGTGC AGCCGACCCG CAATCCTGCC 
TTCACACGCT TTAACGTGTT TCTGCGCGAC AAGTTTCAGT GCCAGTATTG CGGCTCGCCT 
GACGACCTGA CCTTCGATCA CGTCATTCCC CGCGCCCATG GTGGGGAAAC CACCTGGCAG 
AATGTCGTGG CGGCGTGTTC GCCCTGCAAT CTGCGCAAGG GGTCTAAACT GCCGAAACAG 
GCCAATATGT TCCCGGCCCA GAAGCCCTAT CAGCCAAGCG TGCAGGACCT GCATAATAAT 
GGCCGGTCGT TTCCACCCAA CTATCTGCAT GAAAGCTGGG TGGATTATCT CTATTGGGAT 
TCCGAATTGC AGCCTTAA
 
Protein sequence
MTIAVSPQSL PALVLNADYR PLSYYPLSLW SWQDAIKAVF LDRVNIIAEY DHSVCSPSFS 
MRLPSVVSLK TYVQPTRNPA FTRFNVFLRD KFQCQYCGSP DDLTFDHVIP RAHGGETTWQ 
NVVAACSPCN LRKGSKLPKQ ANMFPAQKPY QPSVQDLHNN GRSFPPNYLH ESWVDYLYWD 
SELQP