Gene Avi_3994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3994 
Symbol 
ID7387331 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3366660 
End bp3367553 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content60% 
IMG OID643652721 
Producttranscriptional regulator LysR family 
Protein accessionYP_002550896 
Protein GI222149939 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACGAG GCGAACTGAA CGATCTCTTG GCTTTTGCCG CCGTCGCACG CGAGCGGAGC 
TTCACAAGGG CCGCAGCATC CCTGGGAATA TCGCCCTCGG CGCTGAGCCA TGCCATGCGC
GGATTAGAGG AAAGACTTGG TGTCAGGCTG CTGGCAAGGA CCACACGCAG CGTCGCTCCG
ACGGAAGCCG GCGACAGGCT GCTGCAATCC ATCCGGCCAG CATTCGCATC GATCGAGGAT
GGGCTTTCGG CGCTGGCCGA ATGGCGTGAC AGCCCTTCAG GCTCAGTGCG GATCACGACC
TTCTCTTACC CTGCAAAAAC CGTTCTCATG GCGAAGCTTC CAGCGTTCCT CCTGTCACAT
CCCGAAATCC AGGTCGAAGT GAATATCGAT GACCGGCTGA CAGATATCGT CGCCGAAGGC
TACGACGCCG GAATAAGGTT CGGCGAGAAC GTCGCGAAGG ATATGATCGC CGTGCGGGTC
GGCCCGGACC TTCGAACCAT CGTAGTCGCG ACGCCCTGTT ATTTCGAGCA CCATCCGAAG
CCGAAAACGC CTGGTGATCT TGAAGTCCAC AACTGCATTG GATATCGGCT CGCAAGCGCT
GGCGGACTTC TTCCCTGGGA GTTTGAACGC GATGGACGTG AGATCAAGGT CAGAACCTCC
GGTTCCTTTG TCGGCAATGA CGGCGATCTC GCTGCCGCCG CCGTCAGGGC CGGGGCAGGC
CTTGGCTACC TGTTGGAGCA TGATGTTGCC GAGGACATTG CCTCCGGCCG ATTGATCCAG
GTTCTCGACG AGTGGTGTCC GCAATTTCAG GGCTGCTACC TCTATCACCC GAGCCGCCGT
CAGACGCCAC CGGCACTGCG CGCCCTCATC AGTGCGCTGA AAACGGAGAG CTGA
 
Protein sequence
MERGELNDLL AFAAVARERS FTRAAASLGI SPSALSHAMR GLEERLGVRL LARTTRSVAP 
TEAGDRLLQS IRPAFASIED GLSALAEWRD SPSGSVRITT FSYPAKTVLM AKLPAFLLSH
PEIQVEVNID DRLTDIVAEG YDAGIRFGEN VAKDMIAVRV GPDLRTIVVA TPCYFEHHPK
PKTPGDLEVH NCIGYRLASA GGLLPWEFER DGREIKVRTS GSFVGNDGDL AAAAVRAGAG
LGYLLEHDVA EDIASGRLIQ VLDEWCPQFQ GCYLYHPSRR QTPPALRALI SALKTES