Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3994 |
Symbol | |
ID | 7387331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3366660 |
End bp | 3367553 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643652721 |
Product | transcriptional regulator LysR family |
Protein accession | YP_002550896 |
Protein GI | 222149939 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACGAG GCGAACTGAA CGATCTCTTG GCTTTTGCCG CCGTCGCACG CGAGCGGAGC TTCACAAGGG CCGCAGCATC CCTGGGAATA TCGCCCTCGG CGCTGAGCCA TGCCATGCGC GGATTAGAGG AAAGACTTGG TGTCAGGCTG CTGGCAAGGA CCACACGCAG CGTCGCTCCG ACGGAAGCCG GCGACAGGCT GCTGCAATCC ATCCGGCCAG CATTCGCATC GATCGAGGAT GGGCTTTCGG CGCTGGCCGA ATGGCGTGAC AGCCCTTCAG GCTCAGTGCG GATCACGACC TTCTCTTACC CTGCAAAAAC CGTTCTCATG GCGAAGCTTC CAGCGTTCCT CCTGTCACAT CCCGAAATCC AGGTCGAAGT GAATATCGAT GACCGGCTGA CAGATATCGT CGCCGAAGGC TACGACGCCG GAATAAGGTT CGGCGAGAAC GTCGCGAAGG ATATGATCGC CGTGCGGGTC GGCCCGGACC TTCGAACCAT CGTAGTCGCG ACGCCCTGTT ATTTCGAGCA CCATCCGAAG CCGAAAACGC CTGGTGATCT TGAAGTCCAC AACTGCATTG GATATCGGCT CGCAAGCGCT GGCGGACTTC TTCCCTGGGA GTTTGAACGC GATGGACGTG AGATCAAGGT CAGAACCTCC GGTTCCTTTG TCGGCAATGA CGGCGATCTC GCTGCCGCCG CCGTCAGGGC CGGGGCAGGC CTTGGCTACC TGTTGGAGCA TGATGTTGCC GAGGACATTG CCTCCGGCCG ATTGATCCAG GTTCTCGACG AGTGGTGTCC GCAATTTCAG GGCTGCTACC TCTATCACCC GAGCCGCCGT CAGACGCCAC CGGCACTGCG CGCCCTCATC AGTGCGCTGA AAACGGAGAG CTGA
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Protein sequence | MERGELNDLL AFAAVARERS FTRAAASLGI SPSALSHAMR GLEERLGVRL LARTTRSVAP TEAGDRLLQS IRPAFASIED GLSALAEWRD SPSGSVRITT FSYPAKTVLM AKLPAFLLSH PEIQVEVNID DRLTDIVAEG YDAGIRFGEN VAKDMIAVRV GPDLRTIVVA TPCYFEHHPK PKTPGDLEVH NCIGYRLASA GGLLPWEFER DGREIKVRTS GSFVGNDGDL AAAAVRAGAG LGYLLEHDVA EDIASGRLIQ VLDEWCPQFQ GCYLYHPSRR QTPPALRALI SALKTES
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