| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3988 |
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| Symbol | pleD |
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| ID | 7387326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3359601 |
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| End bp | 3360491 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643652716 |
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| Product | two component response regulator |
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| Protein accession | YP_002550891 |
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| Protein GI | 222149934 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAT GGCCGCATAT GACGGCCCGG GCAATACGTT CGTCGCTGAT AACAAAGATT
TTTGTAATCT GCTTTATCTC CATTCACGTG CCACTTCTGG CGGTGGTTGC ACATGTCCTT
GGTGGCGGCG CACTGAGCGA AGCAAGCATT TTGCTTGTCC TGCTGATATC GACCTTGGCT
GGAACGGCTG GCTGCCTGCT GTCGCTCTGG CGGATCATTC AACCGCTACG CCAACTCAAC
CACTCCATAG CCCGATACCG GCAGGAAGGG GCACCTGTTA CCATCGCAGT CAAGACGAAA
GATGAAATCG GCACTGTCGC CCAGGCGGTT TCAGCCCTGG TAACAGAATT GGACTGTTCT
CTCAAAACCC TGACCCTTCA AGCCAATACT GATCCCCTGA CCGGATTGGC AAACCGCCGG
TTCATTCTGG CAAGAGGCAC GGAGGCTCTT GACGAGACCC GCCGCAGCGG CGATCCCATG
TGCCTTCTTC TCTTCGATCT GGACCATTTC AAGGGCATCA ATGACGCATT CGGCCATGAA
ACCGGCGATA AAGCATTGAT CGCAGCAGCA CAGACAATCC GCAGTAATTT GCGACCAAAC
GATTTGGCAG GCCGGATCGG CGGCGAAGAG TTCTGCGTTC TTCTGCCAGG CACAAATCTG
GTCCAGGCCC AAGCGATTGC CGAACGTCTA CGCACCTGCC TGGAAAATAT TTGTCTTGAA
CCACTGGCAC CTGGCAGGAT CACCGCCAGC TTTGGCCTTG CCCAATCCGC CGATCATTTT
TCAACTTTCC AGAAATTCAT GGCCGCCACC GATATGGCGC TCTACCGCGC CAAACAACAT
GGCCGCAACC GCATCCACTG CGAACCTCAA AACGCCCTCA GCTATTTGTG A
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| Protein sequence | MAEWPHMTAR AIRSSLITKI FVICFISIHV PLLAVVAHVL GGGALSEASI LLVLLISTLA
GTAGCLLSLW RIIQPLRQLN HSIARYRQEG APVTIAVKTK DEIGTVAQAV SALVTELDCS
LKTLTLQANT DPLTGLANRR FILARGTEAL DETRRSGDPM CLLLFDLDHF KGINDAFGHE
TGDKALIAAA QTIRSNLRPN DLAGRIGGEE FCVLLPGTNL VQAQAIAERL RTCLENICLE
PLAPGRITAS FGLAQSADHF STFQKFMAAT DMALYRAKQH GRNRIHCEPQ NALSYL
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