| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3984 |
|---|
| Symbol | |
|---|
| ID | 7387324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3355580 |
|---|
| End bp | 3356863 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643652714 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002550889 |
|---|
| Protein GI | 222149932 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5653] Protein involved in cellulose biosynthesis (CelD) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAC TACCGGTGAC CGACGAGACC AGCCGGGAAA CGAGCACCGA GCGCCCGGTT
CTGCATACCG TGTCTGCACC GGTCAATCGT CCGCCCGCCG ATGGCCAGAT TGCCGTGGGA
CGCCCCGGCC GCGATCTTTG GCTCTATCCA CGCCAGACCA GCTACGACCT TGAACAGGAA
ATGGACTACC TGACCAACCG GGCGCTGGAG CAGAATGTCT TCTTCTCGGC CCGCTTTCTG
GCCCCCGCCA TCCCCCGCCT GGACGAGCGT GAAGTGCGCA TGGCACTGAT CCGCGACGAG
CGGCAGGGTC GCAGCCGGAT CCGGTTGCTG ATGCCTTTCT CCGTGGAAAA ACCGGGATTT
GCAGTCGGTC CATCCATTGT TCGCGTCTGG TCCAACCCCT TCGGCCCGCT TGGCACGCCT
CTGGTCGATG CAGAGGATGC GGTGGAAACG CTCGACAACC TTTTCGAAGG ACTGAGCGAT
CCCAAAGCCA AATTGCCCTC CGTTCTCGTC CTGCCGGATC TGCGAATCGA TGGGCCGGTC
ACAAAACTGC TGCGGGCCGT GGCGATCAGC CGTGACCTAC CACTGACCGT GACAAATCCC
TACCAGCGCC CAATGCTCGA GAGCCTGGAG GATGGAGAAA CCTATCTAAG CCAGGCCATT
GGCAAGTCCC ATTGGCGCGA TATGCGCCGG CAGATGCGCC TGCTGGGTCA GCAGGGCGAA
TTGACCTATT CCGTCGCCCG TCAGCCGCAG GATCTGCATG TCCGCATGGA GGAATTCCTG
GCGCTTGAAG CCAGCGGCTG GAAAGGCCGC AAGCGTAGCG CCCTTGTCAT GGACCGGCTA
CGAGCCGCCT TTGCCCGCGA GGCGATGACC AATCTGGCCG AGCGCGATTC GGTCCGCATC
CATACGCTCG ATCTCGATGG AAAAGCCATC GCCTCCATGG TTGTCTTCAT TATGGGTGCC
GAAGCCTATA CGTGGAAGAC TGCCTATGAT GAGCGCTATG CGCGATATTC GCCCGGCAAG
CTTCTGGTGG CTCGATTGAC AGAATGGCAT CTGGACGATG CCAATATTCT GCGCACCGAT
TCCTGCGCCG TACCCGATCA CCCGGTCATG AGCAGGCTCT GGCGGGAGCG GGAAGACATG
GGAACCATGG TTATCGGCCT GAAGCGCAAT GCCGACCGCG ATGTCCGCCA GGTGGCGGCG
CAACTGCATC TCTATCGCAA CACGCGCAAT ATCGCCCGCA TCCTGCGGGA CAAAGTGCTG
GGCAGGCGCC AAAAAGACAG CTGA
|
|---|
| Protein sequence | MNTLPVTDET SRETSTERPV LHTVSAPVNR PPADGQIAVG RPGRDLWLYP RQTSYDLEQE
MDYLTNRALE QNVFFSARFL APAIPRLDER EVRMALIRDE RQGRSRIRLL MPFSVEKPGF
AVGPSIVRVW SNPFGPLGTP LVDAEDAVET LDNLFEGLSD PKAKLPSVLV LPDLRIDGPV
TKLLRAVAIS RDLPLTVTNP YQRPMLESLE DGETYLSQAI GKSHWRDMRR QMRLLGQQGE
LTYSVARQPQ DLHVRMEEFL ALEASGWKGR KRSALVMDRL RAAFAREAMT NLAERDSVRI
HTLDLDGKAI ASMVVFIMGA EAYTWKTAYD ERYARYSPGK LLVARLTEWH LDDANILRTD
SCAVPDHPVM SRLWREREDM GTMVIGLKRN ADRDVRQVAA QLHLYRNTRN IARILRDKVL
GRRQKDS
|
|---|
| |