| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3982 |
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| Symbol | secA |
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| ID | 7387322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3351308 |
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| End bp | 3354007 |
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| Gene Length | 2700 bp |
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| Protein Length | 899 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643652712 |
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| Product | preprotein translocase SECA subunit |
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| Protein accession | YP_002550887 |
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| Protein GI | 222149930 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCAGTC TTGGTGGGAT CGCCCGCAAA ATTTTCGGCT CCTCGAATGA ACGCCGCATC
CGGGGGAATA AGCCTCGCGT GGCCGCCATC AACGCGCTGG AGGACAGCAT AAAGGCATTG
AGTGATGCCG AGCTGGCCGC AAAGACCGAG GAATTCAAGG GTGAGCTTGC CAAAGGCAAG
ACGCTCGACG ACATCCTGAT CCCGGCCTTT GCCGTGGCGC GCGAAGCATC GCGCCGGGCG
CTCGGCATGC GGCCCTTCGA TGTGCAGCTG ATCGGCGGCA TGATCCTGCA TGAAAACGCC
ATTGCAGAAA TGAAAACCGG CGAAGGCAAG ACGCTGGTGG CAACGCTCGC CGTTTATCTC
AACGCATTGT CCGGCAAGGG CGTGCATGTG GTGACGGTCA ATGATTATCT CGCCAGCCGC
GACGCCGCCA TCATGGCCAA GCTCTACAGC TTCCTCGGGC TGACCACCGG CGTCATCGTG
CATGGCATGA ACGATGATGA GCGCCGCGAG GCCTATGCCT GCGACATCAC CTATGCCACC
AATAACGAGC TTGGGTTCGA CTACCTGCGC GACAACATGA AATATGAGCG CGGCCAGATG
GTGCAGCGCG GCCATAATTA CGCAATCGTC GACGAAGTGG ACTCAATCCT GGTCGATGAG
GCGCGCACGC CGCTGATCAT TTCCGGACCG CTCGACGACC GTTCCGATCT CTACACCACC
ATCGATGCCT TCATTCCGAT GCTGAGCGCC GAAGACTACG AGATCGACGA AAAGCAGAAA
TCGGCCAATT TCTCCGAAGT CGGCACCGAA AAGCTGGAAA ACCTGCTGAA AGACGCTGGC
CTGCTCAAAG GCGTTTCGCT GTATGACGTC GAAAACGTCG CCATCGTCCA TCACATCAAC
AATGCGCTGA AGGCCCACAA GCTGTTCCAG CGCGACAAGG ACTATATCGT TCGCAATGAC
GAAATCGTCA TTATCGACGA GTTCACCGGC CGGATGATGC CGGGCCGCCG TTATTCGGAA
GGCCAGCACC AGGCGCTGGA AGCCAAGGAA AAGGTAACGA TCCAGCCGGA AAACCAGACG
CTGGCCTCGA TTACCTTCCA GAATTATTTC CGGATGTATT CCAAGCTTGC AGGGATGACC
GGTACGGCCA ATACCGAAGC CGAGGAATTC CAGGATATCT ACGGCCTCAG CGTCATCGAA
GTGCCGACCA ACCTGCCGAT CCTGCGTATC GACGAGGATG ATGAGGTCTA CCGGACCTTT
GAGGAAAAGT TCAAGGCGAT CATCGAGGAA ATCAAGGCCT CCGCGTCGCG CAATCAGCCG
GTCCTGGTCG GGACAACATC GATTGAAAAG TCCGAACTGC TGGCCACCAT GCTGCGCCAG
AGCGGATTTA CCGATTTCAG CGTGCTGAAT GCCCGCTATC ACGAGCAGGA AGCCTATATC
GTCTCCCAGG CTGGTGTGCC GGGCGCCGTC ACCATCGCCA CCAACATGGC CGGTCGCGGT
ACCGACATTC AGCTTGGTGG CAATATCGAC ATGCGGCTTG AACGCGATCT GGAAGGCATG
GAGCCCGGCC CCGAGCGCGA CGCCAAGGAA CAGGCGATCC GCGAGGAAGT CAAAGCGCTG
AAGGAAAAGG CACTGGCCGC AGGCGGCCTC TACGTGATCG CCACCGAGCG CCATGAAAGC
CGGCGCATCG ATAACCAGCT GCGTGGCCGT TCTGGTCGTC AGGGCGACCC GGGCCGTTCG
AAATTCTACC TGTCGCTTCA AGACGACCTG ATGCGGATTT TCGGTTCCGA CCGCATGGAC
AGCATGCTTC AGAAGTTGGG CCTGAAGGAA GGCGAAGCCA TCGTCCATCC CTGGATCAAC
AAGGCGCTTG AACGCGCCCA GAAAAAGGTC GAGGCGCGCA ATTTCGACAT CCGCAAGAAC
CTGTTGAAAT ATGACGACGT GCTGAACGAC CAGCGCAAGG TGATTTTCGA GCAGCGCGTC
GAGCTGATGG ATGCCGAAGA CCTGACCGAA ACCATCGACG ACATGCGCCA CGAGCTGATC
GACACCATCG TGCGCACCCA TATCCCGGAA AAGGCCTATG CCGAACAATG GGATGTGGCT
GGCCTGAAGA CGGCAATGAC CGGAATCCTC AACCTCGACC TTCCTATCGA GGACTGGGCG
CAGGAAGAAG GCATTGCTGA AGACGATATC GTCGAACGGG TCAAGAAAGC TGCCGACGAG
GTCATGGCTG AGAAGACCGA GCGCTTCGGC CCGGAAATCA TGGCCTATAT CGAGCGTTCC
GTGTTGTTGC AGACCATCGA TAACCTGTGG CGCGAGCATA TCGTCAACCT CGACCACTTG
CGTTCTGTGG TGGGTTTCCG TGGCTATGCC CAGCGCGATC CCTTGCAGGA ATACAAGGCG
GAAGCGTTCG AACTGTTCCA GGCGCTGCTG GCCAATATGC GTGAAGGCGT GACCGCCCAG
ATGATGCGGG TGGAAATCGT CCGTGAAGCG CCCCCGGAGC CGACCCTGCC GATCATGCAT
GGTCACCACG AAGATCCGCA GACCGGCCAG GATGAATTTG CCGCCGCCGA TGGCATCGTC
GCCCCTGAGA ACCGCAATCC CGCCGATCCC TCGACCTGGG GCAAGGTTGG ACGCAATGAA
ATGTGTCCTT GCGGCTCCGG CAAGCGCTTC AAGCACTGCC ACGGCGCCCT GCTGGCGTAA
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| Protein sequence | MVSLGGIARK IFGSSNERRI RGNKPRVAAI NALEDSIKAL SDAELAAKTE EFKGELAKGK
TLDDILIPAF AVAREASRRA LGMRPFDVQL IGGMILHENA IAEMKTGEGK TLVATLAVYL
NALSGKGVHV VTVNDYLASR DAAIMAKLYS FLGLTTGVIV HGMNDDERRE AYACDITYAT
NNELGFDYLR DNMKYERGQM VQRGHNYAIV DEVDSILVDE ARTPLIISGP LDDRSDLYTT
IDAFIPMLSA EDYEIDEKQK SANFSEVGTE KLENLLKDAG LLKGVSLYDV ENVAIVHHIN
NALKAHKLFQ RDKDYIVRND EIVIIDEFTG RMMPGRRYSE GQHQALEAKE KVTIQPENQT
LASITFQNYF RMYSKLAGMT GTANTEAEEF QDIYGLSVIE VPTNLPILRI DEDDEVYRTF
EEKFKAIIEE IKASASRNQP VLVGTTSIEK SELLATMLRQ SGFTDFSVLN ARYHEQEAYI
VSQAGVPGAV TIATNMAGRG TDIQLGGNID MRLERDLEGM EPGPERDAKE QAIREEVKAL
KEKALAAGGL YVIATERHES RRIDNQLRGR SGRQGDPGRS KFYLSLQDDL MRIFGSDRMD
SMLQKLGLKE GEAIVHPWIN KALERAQKKV EARNFDIRKN LLKYDDVLND QRKVIFEQRV
ELMDAEDLTE TIDDMRHELI DTIVRTHIPE KAYAEQWDVA GLKTAMTGIL NLDLPIEDWA
QEEGIAEDDI VERVKKAADE VMAEKTERFG PEIMAYIERS VLLQTIDNLW REHIVNLDHL
RSVVGFRGYA QRDPLQEYKA EAFELFQALL ANMREGVTAQ MMRVEIVREA PPEPTLPIMH
GHHEDPQTGQ DEFAAADGIV APENRNPADP STWGKVGRNE MCPCGSGKRF KHCHGALLA
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