Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3961 |
Symbol | lpiA |
ID | 7387306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3336147 |
End bp | 3338759 |
Gene Length | 2613 bp |
Protein Length | 870 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643652696 |
Product | Protein regulated by acid pH |
Protein accession | YP_002550871 |
Protein GI | 222149914 |
COG category | [S] Function unknown |
COG ID | [COG0392] Predicted integral membrane protein [COG2898] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGCCG AAATACAATC CGAGAGCCAG GAAAGCGCCG AGCCGCCGAC CAGGTCCGGA TGGCGGGCAG CCCTTGCCGA TTATGGCAGG GCGATTGCCG CCGTGTTCAC GCTGGTCATT TTTGCCGCCG TAGCGCTGGC GATCTATCGG CTGACGGAAG AAGTCAGCTA TGACGACGTC GTCTCGGCCA TGGCCACCAC CGGCTATGAC CAGATCCTGC TGGCAGTGGT GTTTACCGCG CTCAGTTTCC TGTCGCTGTG TCTCTACGAC TGGAACGCCA TGGAATTCAT CGGCCGCAAG CGCCCGATGG CGGAAGTGGC GCTGACCGCC TTCAGTGCCT ATGCCGTCGG TAATGCGGCA GGCTTCGGCA TGCTGTCGGG TGGCGCGATC CGCTACCGGG CCTATTCGCG GGCAGGCCTT GCCCCGGATG AAATCGGTCG TGTCATCGCC TTCGTCACCC TGTCCTTCAG CCTGGGGCTT GCCGCTGTCA CCGCGCTGTC GCTTATTCCG ATGTCGTCGG AAATCGCGCC GCTGCTGAAT ATCAACCCGC TCTGGCTGCG CGGCCTGGCG ATTGCCATCG TCCTTGGCTT TGCCGTGCTG ATCGTCATCG GCCAGCGCCG CAGCCTGACC TTTGCCGGCG TGACGCTGCG GATGGCCGAT ACCCCGACCC TGTCGCGGCA ATTCCTGGTC ACCGTGGCTG ATCTGGCCTT TTCCGCCTCG GTCGTCTATG CGCTCTTGCC GGAACAGGCC GCCATTTCCT GGCCGGCCTT TTTTGCGATC TATTCCATTG CCATCGGGAT CGGCGTGCTC AGCCACGTTC CTGCCGGTAT CGGCGTGTTT GAAACCGTCA TCATCGCAGC CCTTGGCCCG ACCACCAATA TCGACGCGGT GCTCGCCTCA CTGGTGGTTT ACCGCCTGAT CTATTATGTT TTACCGCTGA TTCTGGCCAT CGTGCTGGTG ACAATCACCG AGCTGCGTCA TTATTCCAAA ACCCCGGCAC TGGCCGGGGT CGGACGCACC GCAGCCCGAA TATCACCGGC ACTTCTCGGC GCACTGACCT TCATTCTCGG CGTCATGCTG ATTTTCTCCA GCGTCACGCC GACGCCGGAA AGCAATCTCG AATTCCTGCA AAACATCGTG CCGCTACCGG TGGTGGAAGG CGCGCATTTC TTCACCAGCT TGCTCGGGCT ATTTCTGGTC ATCGCGGCGC GCGGCCTTGC CCAGCGGTTG GACGGCGCGT GGTGGGCGGC CATGGTTGGA GCCTCGACCG CCCTGGTCCT CTCGCTGCTG AAAGCCTTTG CGGTGCTCGA AGCCTCGGCG CTGGCCATCC TGCTGATCGG CCTGTTCGCC AGCAAGCGGC TGTTCATTCG CCCCGCCTCG CTGTTTCGCC AGGTGCTGAC CTCGTCCTGG CTGACTGCCA TCGCCCTGAT CTGCATTTTT GCCTGCTTCA TCCTGTTCTT CGTCTATCGC GATGTCGATT ACACCCGCTC GCTCTGGTGG GAATTCGAGT TTTCGCAAGA AGCGCCGCGC TCGCTGCGCG CCATGCTGGG CCTGACCATC TTCTCATCGG CGCTGGCGGT CTTCAGCCTG TTGCGCCCCG CAGCGCCCGC CGTGACACCG TCGAGCCCGG AAGATATTGA AAAGGCCGTC ACCATTCTCA GCAAATCGGA TGTGGCCGAT AGCAATCTTG TGCGCACCGG CGACAAGGCC GTGATGTTTT CACCGGATGG CCTGGCATTC CTGATGTATG GCAAGCAGGG CCGCTCGTGG ATCGCCTTTC TCGATCCGGT CGGGCCGAAA AAGTCCCGCG ACGAACTGGT TTGGCAATTC GTCGAATCGG CTCGTTTGGC TGGCTGCCGG GCCGTCTTCT ACCAGGCCTC GCCCGTGCTG CTGCCGGCGA TTGCCGATGC CGGCATGCAG GCCTTCAAAC TGGGAGAACT GGCGGTCGTC GATCTCTCCC GCTTCGACCT GAAGGGCGGG AAATGGGCCA ATCTTCGCCA AAGTGCCGCC AAGGCCGAGC GCGACGGACT GAGTTATGAC ATCATTCCCC TGGCCAACGT GCCTGATATT CTCGAAGATC TCCGGGGCGT GTCGGATGGC TGGCTTGCCC AGCACCGCGC CAAGGAAAAG GGCTTTTCCC TCGGCGCGTT CACCGATGAC TATATCCTGA GCCAGCCAGT GATCGTGCTG CGTTTCGAAG GTCGGATCGT CGCTTTTGCC AATATCCTGG TGACGGAAAC CAAGGCCGAG TCATCCATCG ACCTGATGCG CTTTTCGCCG GAGGCCCCGA AGGGATCGAT GGACTATCTG TTCGTCAGCC TGCTGACCCA TCTGCGCAGC GAAGGGTACG AACATTTCAA CCTGGGCATG GCGCCCCTAT CGGGCCTGTC GAGACGCGAT GTGGCCCCGG TCTGGGATCG CATTGCCAAC ACATTCTATG AGCATGGTGA GCGCTTCTAC AATTTCAAGG GGCTTCGGGC TTTCAAGACA AAGTTTCATC CCGAATGGCA ACCCCGCTAT CTCGCCGTTT CAGGCGGCCT CAGTCCGGTC ATCGCGCTCC TGGACGCAAC TCTCCTGATC GGTGGCGGTC TGAAAGGCGT GGTAAAGAAA TGA
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Protein sequence | MAAEIQSESQ ESAEPPTRSG WRAALADYGR AIAAVFTLVI FAAVALAIYR LTEEVSYDDV VSAMATTGYD QILLAVVFTA LSFLSLCLYD WNAMEFIGRK RPMAEVALTA FSAYAVGNAA GFGMLSGGAI RYRAYSRAGL APDEIGRVIA FVTLSFSLGL AAVTALSLIP MSSEIAPLLN INPLWLRGLA IAIVLGFAVL IVIGQRRSLT FAGVTLRMAD TPTLSRQFLV TVADLAFSAS VVYALLPEQA AISWPAFFAI YSIAIGIGVL SHVPAGIGVF ETVIIAALGP TTNIDAVLAS LVVYRLIYYV LPLILAIVLV TITELRHYSK TPALAGVGRT AARISPALLG ALTFILGVML IFSSVTPTPE SNLEFLQNIV PLPVVEGAHF FTSLLGLFLV IAARGLAQRL DGAWWAAMVG ASTALVLSLL KAFAVLEASA LAILLIGLFA SKRLFIRPAS LFRQVLTSSW LTAIALICIF ACFILFFVYR DVDYTRSLWW EFEFSQEAPR SLRAMLGLTI FSSALAVFSL LRPAAPAVTP SSPEDIEKAV TILSKSDVAD SNLVRTGDKA VMFSPDGLAF LMYGKQGRSW IAFLDPVGPK KSRDELVWQF VESARLAGCR AVFYQASPVL LPAIADAGMQ AFKLGELAVV DLSRFDLKGG KWANLRQSAA KAERDGLSYD IIPLANVPDI LEDLRGVSDG WLAQHRAKEK GFSLGAFTDD YILSQPVIVL RFEGRIVAFA NILVTETKAE SSIDLMRFSP EAPKGSMDYL FVSLLTHLRS EGYEHFNLGM APLSGLSRRD VAPVWDRIAN TFYEHGERFY NFKGLRAFKT KFHPEWQPRY LAVSGGLSPV IALLDATLLI GGGLKGVVKK
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