Gene Avi_3961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3961 
SymbollpiA 
ID7387306 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3336147 
End bp3338759 
Gene Length2613 bp 
Protein Length870 aa 
Translation table11 
GC content61% 
IMG OID643652696 
ProductProtein regulated by acid pH 
Protein accessionYP_002550871 
Protein GI222149914 
COG category[S] Function unknown 
COG ID[COG0392] Predicted integral membrane protein
[COG2898] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGCCG AAATACAATC CGAGAGCCAG GAAAGCGCCG AGCCGCCGAC CAGGTCCGGA 
TGGCGGGCAG CCCTTGCCGA TTATGGCAGG GCGATTGCCG CCGTGTTCAC GCTGGTCATT
TTTGCCGCCG TAGCGCTGGC GATCTATCGG CTGACGGAAG AAGTCAGCTA TGACGACGTC
GTCTCGGCCA TGGCCACCAC CGGCTATGAC CAGATCCTGC TGGCAGTGGT GTTTACCGCG
CTCAGTTTCC TGTCGCTGTG TCTCTACGAC TGGAACGCCA TGGAATTCAT CGGCCGCAAG
CGCCCGATGG CGGAAGTGGC GCTGACCGCC TTCAGTGCCT ATGCCGTCGG TAATGCGGCA
GGCTTCGGCA TGCTGTCGGG TGGCGCGATC CGCTACCGGG CCTATTCGCG GGCAGGCCTT
GCCCCGGATG AAATCGGTCG TGTCATCGCC TTCGTCACCC TGTCCTTCAG CCTGGGGCTT
GCCGCTGTCA CCGCGCTGTC GCTTATTCCG ATGTCGTCGG AAATCGCGCC GCTGCTGAAT
ATCAACCCGC TCTGGCTGCG CGGCCTGGCG ATTGCCATCG TCCTTGGCTT TGCCGTGCTG
ATCGTCATCG GCCAGCGCCG CAGCCTGACC TTTGCCGGCG TGACGCTGCG GATGGCCGAT
ACCCCGACCC TGTCGCGGCA ATTCCTGGTC ACCGTGGCTG ATCTGGCCTT TTCCGCCTCG
GTCGTCTATG CGCTCTTGCC GGAACAGGCC GCCATTTCCT GGCCGGCCTT TTTTGCGATC
TATTCCATTG CCATCGGGAT CGGCGTGCTC AGCCACGTTC CTGCCGGTAT CGGCGTGTTT
GAAACCGTCA TCATCGCAGC CCTTGGCCCG ACCACCAATA TCGACGCGGT GCTCGCCTCA
CTGGTGGTTT ACCGCCTGAT CTATTATGTT TTACCGCTGA TTCTGGCCAT CGTGCTGGTG
ACAATCACCG AGCTGCGTCA TTATTCCAAA ACCCCGGCAC TGGCCGGGGT CGGACGCACC
GCAGCCCGAA TATCACCGGC ACTTCTCGGC GCACTGACCT TCATTCTCGG CGTCATGCTG
ATTTTCTCCA GCGTCACGCC GACGCCGGAA AGCAATCTCG AATTCCTGCA AAACATCGTG
CCGCTACCGG TGGTGGAAGG CGCGCATTTC TTCACCAGCT TGCTCGGGCT ATTTCTGGTC
ATCGCGGCGC GCGGCCTTGC CCAGCGGTTG GACGGCGCGT GGTGGGCGGC CATGGTTGGA
GCCTCGACCG CCCTGGTCCT CTCGCTGCTG AAAGCCTTTG CGGTGCTCGA AGCCTCGGCG
CTGGCCATCC TGCTGATCGG CCTGTTCGCC AGCAAGCGGC TGTTCATTCG CCCCGCCTCG
CTGTTTCGCC AGGTGCTGAC CTCGTCCTGG CTGACTGCCA TCGCCCTGAT CTGCATTTTT
GCCTGCTTCA TCCTGTTCTT CGTCTATCGC GATGTCGATT ACACCCGCTC GCTCTGGTGG
GAATTCGAGT TTTCGCAAGA AGCGCCGCGC TCGCTGCGCG CCATGCTGGG CCTGACCATC
TTCTCATCGG CGCTGGCGGT CTTCAGCCTG TTGCGCCCCG CAGCGCCCGC CGTGACACCG
TCGAGCCCGG AAGATATTGA AAAGGCCGTC ACCATTCTCA GCAAATCGGA TGTGGCCGAT
AGCAATCTTG TGCGCACCGG CGACAAGGCC GTGATGTTTT CACCGGATGG CCTGGCATTC
CTGATGTATG GCAAGCAGGG CCGCTCGTGG ATCGCCTTTC TCGATCCGGT CGGGCCGAAA
AAGTCCCGCG ACGAACTGGT TTGGCAATTC GTCGAATCGG CTCGTTTGGC TGGCTGCCGG
GCCGTCTTCT ACCAGGCCTC GCCCGTGCTG CTGCCGGCGA TTGCCGATGC CGGCATGCAG
GCCTTCAAAC TGGGAGAACT GGCGGTCGTC GATCTCTCCC GCTTCGACCT GAAGGGCGGG
AAATGGGCCA ATCTTCGCCA AAGTGCCGCC AAGGCCGAGC GCGACGGACT GAGTTATGAC
ATCATTCCCC TGGCCAACGT GCCTGATATT CTCGAAGATC TCCGGGGCGT GTCGGATGGC
TGGCTTGCCC AGCACCGCGC CAAGGAAAAG GGCTTTTCCC TCGGCGCGTT CACCGATGAC
TATATCCTGA GCCAGCCAGT GATCGTGCTG CGTTTCGAAG GTCGGATCGT CGCTTTTGCC
AATATCCTGG TGACGGAAAC CAAGGCCGAG TCATCCATCG ACCTGATGCG CTTTTCGCCG
GAGGCCCCGA AGGGATCGAT GGACTATCTG TTCGTCAGCC TGCTGACCCA TCTGCGCAGC
GAAGGGTACG AACATTTCAA CCTGGGCATG GCGCCCCTAT CGGGCCTGTC GAGACGCGAT
GTGGCCCCGG TCTGGGATCG CATTGCCAAC ACATTCTATG AGCATGGTGA GCGCTTCTAC
AATTTCAAGG GGCTTCGGGC TTTCAAGACA AAGTTTCATC CCGAATGGCA ACCCCGCTAT
CTCGCCGTTT CAGGCGGCCT CAGTCCGGTC ATCGCGCTCC TGGACGCAAC TCTCCTGATC
GGTGGCGGTC TGAAAGGCGT GGTAAAGAAA TGA
 
Protein sequence
MAAEIQSESQ ESAEPPTRSG WRAALADYGR AIAAVFTLVI FAAVALAIYR LTEEVSYDDV 
VSAMATTGYD QILLAVVFTA LSFLSLCLYD WNAMEFIGRK RPMAEVALTA FSAYAVGNAA
GFGMLSGGAI RYRAYSRAGL APDEIGRVIA FVTLSFSLGL AAVTALSLIP MSSEIAPLLN
INPLWLRGLA IAIVLGFAVL IVIGQRRSLT FAGVTLRMAD TPTLSRQFLV TVADLAFSAS
VVYALLPEQA AISWPAFFAI YSIAIGIGVL SHVPAGIGVF ETVIIAALGP TTNIDAVLAS
LVVYRLIYYV LPLILAIVLV TITELRHYSK TPALAGVGRT AARISPALLG ALTFILGVML
IFSSVTPTPE SNLEFLQNIV PLPVVEGAHF FTSLLGLFLV IAARGLAQRL DGAWWAAMVG
ASTALVLSLL KAFAVLEASA LAILLIGLFA SKRLFIRPAS LFRQVLTSSW LTAIALICIF
ACFILFFVYR DVDYTRSLWW EFEFSQEAPR SLRAMLGLTI FSSALAVFSL LRPAAPAVTP
SSPEDIEKAV TILSKSDVAD SNLVRTGDKA VMFSPDGLAF LMYGKQGRSW IAFLDPVGPK
KSRDELVWQF VESARLAGCR AVFYQASPVL LPAIADAGMQ AFKLGELAVV DLSRFDLKGG
KWANLRQSAA KAERDGLSYD IIPLANVPDI LEDLRGVSDG WLAQHRAKEK GFSLGAFTDD
YILSQPVIVL RFEGRIVAFA NILVTETKAE SSIDLMRFSP EAPKGSMDYL FVSLLTHLRS
EGYEHFNLGM APLSGLSRRD VAPVWDRIAN TFYEHGERFY NFKGLRAFKT KFHPEWQPRY
LAVSGGLSPV IALLDATLLI GGGLKGVVKK