| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3946 |
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| Symbol | sbcC |
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| ID | 7387297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3310963 |
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| End bp | 3314037 |
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| Gene Length | 3075 bp |
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| Protein Length | 1024 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652681 |
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| Product | exonuclease protein |
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| Protein accession | YP_002550862 |
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| Protein GI | 222149905 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0419] ATPase involved in DNA repair |
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| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGACCTG TCCGCTTGGT GATGCAGGCC TTTGGCCCCT ATGCCGGACG CCAATCCATC
GATTTTCGCG AAGCCGTCGC CGCTGGCCTG TTCGGCATCT ACGGCCAGAC GGGATCGGGG
AAATCGACGA TTTTCAGCGC CATGACCTTT GCCCTATTCG GGGAAGCGGC GAGAGCCGAG
CAGGACACCA TCTCGCTGCG CTCCGACCAT GCTTCGCCCG ACCTAGCAAC CGAGGTGGAA
TTCGTATTCG ATCTTGGCGC CCGCCGCTAT GTCATCCGCC GGCGTCCCGA ACAGATGCGG
CCAAAACAAC GCGGCGGTGG CGAAACCCGG GACGCCCACG AGGCCTGGCT GTTCGACGCC
ACCGGGCTTG GTGAAAGCGA AATTACCGCC GCCCAGCCGG GCAAGGTGCT GGCTGAAAAA
AAGATCGGTC TGGTACGCGA AAAAATCACC GATCTGCTCG GTTACGGTCC TGAACAGTTC
AAGCAGATCG TGCTTCTGCC GCAGGGCCGG TTCGAGGCCT TTCTTGCCGC CAAAACCCAG
GAACGACAAG ATATTCTCAG CGCCCTCTTC GATGTGTCGC TCTATCGCCG GCTAGCGGCA
AAACTGAAGA GCGATGCCGA AAGCGCCGAA CGGCTGGTGC GCGAGGAGCG CGCCGTCTGC
CTTCGCCGCC TCGGTGCCGA CGGGTTCGAC AGCATGCAGG CACTGATGGA CGGGATTGCC
GAGGCGGCAT CGTCGCTCAC CGACCGGCAG CAAGCGGAAC AGCATTTACG GGCTGAGGCG
GATGCCGCCC GCGCTTCGTT GCAAGCAGCG AGAGACACCG ATAACCAGTT CAAGTCCATG
GACGCCGCTC GTCAGGCAAA ACAGAAAACC CTCGACCAGG CCACAGACAT GGCCGCGCTG
CAAGCGCAGG TCACATCCGC CGAACGCGCC CGGACACTGG CCGATGCGGA GAACCGGGTG
ATAGAGGCAC AGCGCGAGTG CAAGGATGCT GAGGCCGCGC TGTCTCTGGC AATGCAGATC
CAGACATCGA CGCAGGCAAC GGCACAACAA GCGCAAGCTG CCTACCTTCA ACAAATACAA
AGCAAAAGCG AAATAGAGGC GCTGCGCCGG ACAATCGATC AGATGGAACG CGATCGAGAT
GTGCTGGAAA AAGCCACCGG CCTCACCGCA TCGGTCGAGG CGGCCAAACG ACGCGTGCAG
GAGGAACAGG CCGCATTCCG AACCGCAGAG GCCGGTCTTG CCGAGCTGAC TGGCAAGCGG
CAAGTCCGGG AACAGGCATT GAAACAGGCC CGCCTTGCCC ATGAGCGCAG GCAATCATTG
ACCGCAAACC TTACGGCCTT GCAGGCGCAG GTGAAGCAGG CTGAGATTGT GGAACGGGCC
GAAAAAGATC TGCAACAGGC CTACCAGCAG TTAAACCATA GTGCAAACAT CCATGCCGAA
CGACAGGCTC AGACCACCAA GGCCGCAGCA CTGTTCGATC AGGCCGAACG TCGGCTTGCC
TCCGCGCAGG CTCTCCATTT GGCAGCAAAG CTGGGGCCTG GTCTCCCCTG CCCTGTTTGT
GGCGCAACCG ACCATCCGAC CCCTGCGATG GGGGACAGCG CCGAGGCCGG ATTGGACAAG
GCCTTTCGCG AAGCGAAACA GGCGCTGGAA AAGGCGCGAT TGGAAGAGCA GCATAGCGCT
ACCGCTCACG CCTCTGCGCA AGCCACCGTT GATGAACGCC AAGGTCGCCT AGGAGATCTG
GAGCGGCCCG AGCAGCAGAT CCAGGAGTTG CGCCAGGACA TGGAAGGGAT GGAGCGTGCC
CTTCGCGGGC TCGGCCCGGC CATCGATATC GCCGCTGCCG AAACCGCGCT GGAAAATCTT
GGAAAAGCCA TCACCGATGC CCAAGCCCGG CTGGATCAGC ACCGGGATCG GCTGGCCGCG
CTGAAGACCG AGACCAGCAA TGGTGAAACG CGACTTGCCG AAATGCTCTC CGGCATCGCA
GCACATCTGC GGGATAAAGC AGCCCTGGAG CGCCAGCTTC AACAGTCGAA GGCCTTGATG
ACAAGCCGGG AAACGGCATT GAAGCGCAGC GAAGAAGCCG CAACGGCAAC GCGCGAAGCG
GCATTCAGCG CGCACAAAGA CAGCGAAGCC GCCGAAAACA TCCTGACCGA AAGACAAGCC
CGCTTCGAAA AGGAAAATCA GGGTTTCGAG GATCGCCTGC GCGACGCTGG CCTGACGCGC
GACGATCTGA ACCGCCTGAA ACCTGCAATC ATGACACTTG AGCGTGACAA AGCGACGATA
GAGACCCACC AGCGCCAATT GCAGCGCGAC AGTGAAAAGC TCTTGGAATT GGAGACCGCG
CTCACGGGTA AGCAGCCGCC GGACCTTCTC GCCCATCAAG AGGCGCTTGC GTCCGCTGAA
GCCGCTTTCG ATACAGCCGT TACACTGCGC GCAGCAACGG CGGCTCGGCT CGATCACCTG
CAAAACTTGC GCAAAGAGCT TGCCGGCATC GCCAAACGGC TTGACGAAGC CGAGGCAACC
TCCGGCCCTC TGCGGGAGCT GGCTGGCCTG TTCGATGCCC AGAACCGGCA GAAACTGAAA
CTGGAAACCT TCGCCATCGG CGCGATGTTC GAACAGGTCT TGCAAGCAGC CAACCTGCGG
CTGGGACCGA TGACCAATGG CCGCTACAGG CTGGAACGTG ACATCGAATC CGGTGGCCGG
GGTAAGCGTG GGCTGGGCAT TCTCGCCTTC GATGTCCATA CCGGCAAGGC AAGACCCACC
GCGACACTTT CCGGTGGTGA AACCTTCATC GCCGCCCTGG CACTTGCCCT GGGTCTGGCC
GACGTGGTCG AAAGCGCCAG CGGCAAGGTG CGCCTCGATA CGATTTTCCT CGATGAAGGC
TTCGGCAGCC TTGATACGGA AAACGGCTCA GGCACACTTG ATCTGGTCTT GCAGGCTTTG
AATAGCCTAG CCAGCCAGAA CCGCACTGTT GGACTGATAT CTCATGTTCC GCTTGTTCAG
GAAGCAATTC CGAATGGTTT TTACGTCAGG AAGGACAGCG ATGGCAGCCA TGTGGAAGCT
CGAGGAATGA TGTAA
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| Protein sequence | MRPVRLVMQA FGPYAGRQSI DFREAVAAGL FGIYGQTGSG KSTIFSAMTF ALFGEAARAE
QDTISLRSDH ASPDLATEVE FVFDLGARRY VIRRRPEQMR PKQRGGGETR DAHEAWLFDA
TGLGESEITA AQPGKVLAEK KIGLVREKIT DLLGYGPEQF KQIVLLPQGR FEAFLAAKTQ
ERQDILSALF DVSLYRRLAA KLKSDAESAE RLVREERAVC LRRLGADGFD SMQALMDGIA
EAASSLTDRQ QAEQHLRAEA DAARASLQAA RDTDNQFKSM DAARQAKQKT LDQATDMAAL
QAQVTSAERA RTLADAENRV IEAQRECKDA EAALSLAMQI QTSTQATAQQ AQAAYLQQIQ
SKSEIEALRR TIDQMERDRD VLEKATGLTA SVEAAKRRVQ EEQAAFRTAE AGLAELTGKR
QVREQALKQA RLAHERRQSL TANLTALQAQ VKQAEIVERA EKDLQQAYQQ LNHSANIHAE
RQAQTTKAAA LFDQAERRLA SAQALHLAAK LGPGLPCPVC GATDHPTPAM GDSAEAGLDK
AFREAKQALE KARLEEQHSA TAHASAQATV DERQGRLGDL ERPEQQIQEL RQDMEGMERA
LRGLGPAIDI AAAETALENL GKAITDAQAR LDQHRDRLAA LKTETSNGET RLAEMLSGIA
AHLRDKAALE RQLQQSKALM TSRETALKRS EEAATATREA AFSAHKDSEA AENILTERQA
RFEKENQGFE DRLRDAGLTR DDLNRLKPAI MTLERDKATI ETHQRQLQRD SEKLLELETA
LTGKQPPDLL AHQEALASAE AAFDTAVTLR AATAARLDHL QNLRKELAGI AKRLDEAEAT
SGPLRELAGL FDAQNRQKLK LETFAIGAMF EQVLQAANLR LGPMTNGRYR LERDIESGGR
GKRGLGILAF DVHTGKARPT ATLSGGETFI AALALALGLA DVVESASGKV RLDTIFLDEG
FGSLDTENGS GTLDLVLQAL NSLASQNRTV GLISHVPLVQ EAIPNGFYVR KDSDGSHVEA
RGMM
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