Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3945 |
Symbol | |
ID | 7387296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3309827 |
End bp | 3310966 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643652680 |
Product | ATP-dependent dsDNA exonuclease protein |
Protein accession | YP_002550861 |
Protein GI | 222149904 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATCC TCCACACCGC CGACCTGCAT CTGGGCCGCC AACTGAACGG ATTATCGCTG GACGAGGATC AAGACGCCAT TCTCGATCAG ATCGTTGATG CGCTCCGCAC CACCCGTGCC GATATCCTGA TCATTGCCGG CGATATTTTC GACCGGGCAG CCCCTCCGGC AACAGCGGTA CGCCAGTTCA ACGCCTTCCT GTCACGGGTG GCGGCAGAAA CCACCGCCGC CGTGGCGATC ATTGCCGGCA ATCACGATTC AGGCGACCGG ATTGGTGCCA TGGCGATCAT GACCGACAGG CGCCGCGCGC TCATTCAGGG CCCTATTGCA AGAGATATGA CACCCCTTGT CCTGCATGAC GCCCACGGAC CGGTGGCGTT TTCCGCCCTG CCCTTCGCCT ATGAGTTTGC CGCCCGCGAA TGTTTTGCCG ACCCGGCCAT AGCCACACCG CAAGACGTGT TGGCCGCCCA GGTGGCCGAC GCGCGCCGCA GCCTGCCGGA GGGTGCGCGT TGGGTGGTGA TCGCCCACGC CTTTGTCGCG GGAGGAACAA GCGGCGAGAC GGAACGTCCG CTGGCCCGCG TCGGCGGTAT TGAGACCGTG TCACCGGAGA TTTTCGACGG CGCTCATTAT GTGGCACTCG GTCATCTACA CCGGCCACAA CATGTGTCAG CCCCTCACAT CCGCTATTCC GGCTCACCGC TGGCGTTCAG TTTCGGCGAG GCCAGCGAAC AGAAATCCAT GACCCTGGTC GATCTCGACG CCGATGGTCG GGTACGGATC GAAACCATCG ATTTCAACCC ACCACGGGCC GTGCGCCTGT TGCGCGGGCT ATTGGCCGAT CTGCTTCTGG CCCAACCGTC GCAGGACTTC ATCAAGGCGG TGCTCACCGA TCCCACCCCA CTGATTGATC CGATGAAGCG GTTGCGGGCG GTGTTTCCCA ATGCCTGCCA GTTGACCTAT GCCCGTGACG AGCGGGCGCC GGAGCTGAAA TTCGCCATCA GCACGGCTGC CCCAGCCGAT CCGCTGGAGG TGATCGCCGA TTTCATCGCC CAGGTTCGTG ATGAGCCGAT CTCCGAGCCA GAACGCGCGC TGATAACGGC CATGCTGGAC GATCTGGACG CCGAGGAGAA TGCCGCATGA
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Protein sequence | MKILHTADLH LGRQLNGLSL DEDQDAILDQ IVDALRTTRA DILIIAGDIF DRAAPPATAV RQFNAFLSRV AAETTAAVAI IAGNHDSGDR IGAMAIMTDR RRALIQGPIA RDMTPLVLHD AHGPVAFSAL PFAYEFAARE CFADPAIATP QDVLAAQVAD ARRSLPEGAR WVVIAHAFVA GGTSGETERP LARVGGIETV SPEIFDGAHY VALGHLHRPQ HVSAPHIRYS GSPLAFSFGE ASEQKSMTLV DLDADGRVRI ETIDFNPPRA VRLLRGLLAD LLLAQPSQDF IKAVLTDPTP LIDPMKRLRA VFPNACQLTY ARDERAPELK FAISTAAPAD PLEVIADFIA QVRDEPISEP ERALITAMLD DLDAEENAA
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