Gene Avi_3945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3945 
Symbol 
ID7387296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3309827 
End bp3310966 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content63% 
IMG OID643652680 
ProductATP-dependent dsDNA exonuclease protein 
Protein accessionYP_002550861 
Protein GI222149904 
COG category[L] Replication, recombination and repair 
COG ID[COG0420] DNA repair exonuclease 
TIGRFAM ID[TIGR00619] exonuclease SbcD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATCC TCCACACCGC CGACCTGCAT CTGGGCCGCC AACTGAACGG ATTATCGCTG 
GACGAGGATC AAGACGCCAT TCTCGATCAG ATCGTTGATG CGCTCCGCAC CACCCGTGCC
GATATCCTGA TCATTGCCGG CGATATTTTC GACCGGGCAG CCCCTCCGGC AACAGCGGTA
CGCCAGTTCA ACGCCTTCCT GTCACGGGTG GCGGCAGAAA CCACCGCCGC CGTGGCGATC
ATTGCCGGCA ATCACGATTC AGGCGACCGG ATTGGTGCCA TGGCGATCAT GACCGACAGG
CGCCGCGCGC TCATTCAGGG CCCTATTGCA AGAGATATGA CACCCCTTGT CCTGCATGAC
GCCCACGGAC CGGTGGCGTT TTCCGCCCTG CCCTTCGCCT ATGAGTTTGC CGCCCGCGAA
TGTTTTGCCG ACCCGGCCAT AGCCACACCG CAAGACGTGT TGGCCGCCCA GGTGGCCGAC
GCGCGCCGCA GCCTGCCGGA GGGTGCGCGT TGGGTGGTGA TCGCCCACGC CTTTGTCGCG
GGAGGAACAA GCGGCGAGAC GGAACGTCCG CTGGCCCGCG TCGGCGGTAT TGAGACCGTG
TCACCGGAGA TTTTCGACGG CGCTCATTAT GTGGCACTCG GTCATCTACA CCGGCCACAA
CATGTGTCAG CCCCTCACAT CCGCTATTCC GGCTCACCGC TGGCGTTCAG TTTCGGCGAG
GCCAGCGAAC AGAAATCCAT GACCCTGGTC GATCTCGACG CCGATGGTCG GGTACGGATC
GAAACCATCG ATTTCAACCC ACCACGGGCC GTGCGCCTGT TGCGCGGGCT ATTGGCCGAT
CTGCTTCTGG CCCAACCGTC GCAGGACTTC ATCAAGGCGG TGCTCACCGA TCCCACCCCA
CTGATTGATC CGATGAAGCG GTTGCGGGCG GTGTTTCCCA ATGCCTGCCA GTTGACCTAT
GCCCGTGACG AGCGGGCGCC GGAGCTGAAA TTCGCCATCA GCACGGCTGC CCCAGCCGAT
CCGCTGGAGG TGATCGCCGA TTTCATCGCC CAGGTTCGTG ATGAGCCGAT CTCCGAGCCA
GAACGCGCGC TGATAACGGC CATGCTGGAC GATCTGGACG CCGAGGAGAA TGCCGCATGA
 
Protein sequence
MKILHTADLH LGRQLNGLSL DEDQDAILDQ IVDALRTTRA DILIIAGDIF DRAAPPATAV 
RQFNAFLSRV AAETTAAVAI IAGNHDSGDR IGAMAIMTDR RRALIQGPIA RDMTPLVLHD
AHGPVAFSAL PFAYEFAARE CFADPAIATP QDVLAAQVAD ARRSLPEGAR WVVIAHAFVA
GGTSGETERP LARVGGIETV SPEIFDGAHY VALGHLHRPQ HVSAPHIRYS GSPLAFSFGE
ASEQKSMTLV DLDADGRVRI ETIDFNPPRA VRLLRGLLAD LLLAQPSQDF IKAVLTDPTP
LIDPMKRLRA VFPNACQLTY ARDERAPELK FAISTAAPAD PLEVIADFIA QVRDEPISEP
ERALITAMLD DLDAEENAA