| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3932 |
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| Symbol | |
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| ID | 7387288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3299228 |
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| End bp | 3301114 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652672 |
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| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
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| Protein accession | YP_002550853 |
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| Protein GI | 222149896 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGAAT GCGCAGATCT GCTTTATGTG GATAATATCA GTGTGTCTTT TCCCCTGTTG
GGCGCAAGCA TCCAGGCGGT CAAGTCTTTC AGCATGGTGC TGCGGCCCGG CAAGGTCACG
GCGCTGGTCG GTGAATCCGG GTCGGGTAAA TCCGTGCTTG GACGCTCGAT CATGGGGATC
GAGTCCAACC TGGCACAGAT CAATGGCCGG GTTGTTTTTA ATGATCCGCA AAAGGCAGCC
CAGGTCGATC TGCTGTCCTT GCCCTATGAC GGTCGCCAGA TCCGCCAGAT TCGCGGCAAC
CGGATCGGCA TGATCTTCCA GGAGCCGATG ACCTCGTTTT CGCCGGTCCA TACCGTCGGC
AATCAGATTG AGGAAGTGTT GCGGGTCCAC ACCACGCTTT CGCCGCGCGA ACGTCAGGAG
CGGCTGGAGG AAATGCTGGG TCTGGTCGGG TTCAACGACC CGGCCCGTGT GGCAACCATG
TATCCGTTCG AACTGTCCGG CGGCATGCGC CAGCGGGCGA TGATTGCCAT GGCGCTGATC
TGCAATCCGG CGCTGCTGAT TGCCGATGAA CCAACCACGG CGCTTGATGT CACCATCCAG
GCACAAATCC TCAAGCTCCT GAAGGAGTTG CAGGAAAAGC TTGGCATGGC GATCCTGTTG
ATCACCCATG ATCTGGGTGT CGTCGCCAGT CTTGCGGATG AAGTGGTGGT GATCTATCGC
GGCGAAGTGA TGGAATCCGG CCCGGTTGAG GCAATTTTCA GCGCACCGCA ACATGCCTAT
ACCAAGGGCC TGATGCAGGC CGTGCCGCAT TTCGACATGG ACCGCAACGA GCGCCTGAAG
CCGCTTCGGG AAATCCGCGT CGATACCGGC CGGTTGATGG ACAAATGTCG CGTGCCGTCC
GGCGGCGATG GCGTGTTGCT CTCGGTGCGC AATATTTCCA AATCTTTCCA GTCCAAGGGC
TCGAACGGGT TTTTCTCGCG CCCGTCTTCG CCAACTTTGG CCGTCAACGA TGTCTCCTTC
GATATTTTTC GCGGTGAAAC CTTAGGCTTG GTGGGCGAAA GCGGGTGCGG CAAGACCACG
CTCAGCAAGA TTTTGATGCG CGGCGTCACC GCTGATCACG GCACGGCTGT CTATCATGGT
GCCGATGGTC CGCTGGATAT GCTCAAGGCT CAAGGGCCAA AGCTGCAAGA CCTGCGCACC
CGCATCCAGA TGGTGTTTCA GGACCCGGTC TCTTCCCTGT CACCGCGCAT GACGGTGCGC
GGCATCATCA GCGAACCCCT GGAAATTCAT GAGCGTGGCA ACCGGGCCGC TCGGCTGGAT
CTGGTCAACC GGCTGATCCA TGCGATTGGT CTCCCTGAGA CGGCATTAGG CCGCTATCCG
CATAGTTTTT CCGGTGGGCA GCGGCAGCGG ATCGGCATTG CCCGGTCGCT GGCGCTGGGG
CCGGATCTGG TGATCTGCGA TGAGCCGGTC TCGGCACTTG ATGTCTCGGT GCAGGCACAA
ATCCTCAACC TGATGAAGGA TTTGAAGAGT GAGCTTGGCC TGACCTATCT GTTCATTTCC
CACAATCTGG CCGTGGTGAA TTACATGGCC GACCGGGTGG CGGTAATGTA TGCGGGCCGT
ATTGTCGAGA TTGCCCCTTG CGAGGTGATC ATGCGCGATC CGGTCCATCC CTATACCAAG
AAATTGCTGG CGGCGGTGCC GCTGCCCAAC CTGGATCATC CGATGGATTT CAACCTGATC
GGAGAACCGT CGCTGGCTGC CAAAAAGCGC TGGGCCAGGC ATTTTCACGA CGAAGGCGAT
CCGGCAACGC TTGCCCATGC CGATCTGGGT GGTGGCCATC TGGTTTTGGC CCGCCGTGAG
GTGGATGCAA GGGAGTTGCG CTCGTGA
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| Protein sequence | MAECADLLYV DNISVSFPLL GASIQAVKSF SMVLRPGKVT ALVGESGSGK SVLGRSIMGI
ESNLAQINGR VVFNDPQKAA QVDLLSLPYD GRQIRQIRGN RIGMIFQEPM TSFSPVHTVG
NQIEEVLRVH TTLSPRERQE RLEEMLGLVG FNDPARVATM YPFELSGGMR QRAMIAMALI
CNPALLIADE PTTALDVTIQ AQILKLLKEL QEKLGMAILL ITHDLGVVAS LADEVVVIYR
GEVMESGPVE AIFSAPQHAY TKGLMQAVPH FDMDRNERLK PLREIRVDTG RLMDKCRVPS
GGDGVLLSVR NISKSFQSKG SNGFFSRPSS PTLAVNDVSF DIFRGETLGL VGESGCGKTT
LSKILMRGVT ADHGTAVYHG ADGPLDMLKA QGPKLQDLRT RIQMVFQDPV SSLSPRMTVR
GIISEPLEIH ERGNRAARLD LVNRLIHAIG LPETALGRYP HSFSGGQRQR IGIARSLALG
PDLVICDEPV SALDVSVQAQ ILNLMKDLKS ELGLTYLFIS HNLAVVNYMA DRVAVMYAGR
IVEIAPCEVI MRDPVHPYTK KLLAAVPLPN LDHPMDFNLI GEPSLAAKKR WARHFHDEGD
PATLAHADLG GGHLVLARRE VDARELRS
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