| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3924 |
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| Symbol | lspL |
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| ID | 7387281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3290207 |
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| End bp | 3291226 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652665 |
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| Product | UDP-glucuronic acid epimerase |
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| Protein accession | YP_002550846 |
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| Protein GI | 222149889 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGCTATT TCATCACCGG CACCGCTGGC TTTATCGGCT TTCATCTGGC CCGCCGTCTG
CTTCAGGACG GCCATACCGT CACCGGCTAT GACGGGATGA CCGCCTATTA CAATCTGAAA
CTGAAAGAAG CCCGCAACGC TGCTCTTGCT CAGTTTCCAA ACTTTAGCGG CGTCATTGGC
ATGCTGGAGG ACCGCGACGC GCTTGAGCGG GCCGTGGATC AGGCCAAGCC CGACGTCATC
ATCCATCTCG CTGCCCAGGC AGGCGTACGC TACAGTCTAG AAAACCCGAA AGCCTATCTG
GATTCCAACC TGATCGGGTC CTGGAACATC GTCGAGATCG CCAGGCAATT GCAGATCGGC
CATTTGATGC TGGCCTCGAC CTCATCGATT TACGGCGCTA ATCCGCAGGT TCCCTTCCGT
GAGACCGACC GCGCCGACGA GCCGATGACA TTCTATGCCG CCAGCAAGAA GGGCATGGAG
CTGATGGCGC ACAGCTATGC CCATCTCTAC AAAGTGCCGA CCACAGCCTT CCGGTTCTTC
ACCGTCTACG GCCCCTGGGG TCGCCCGGAT ATGGCGCTGT TCAAGTTCAT GAAGGCCATG
CTGGCCGATG AAGCCATCGA GATCTATGGC GAAGGCAAGA TGAGCCGCGA TTTCACCTAT
ATCGACGACC TGATCGACAG TGTCATCGCG CTGTCAGCCA TTGCTCCCAG CGAGGAAAAC
CGGGTCCGCA CCCCGGAAAA CCTGGATACG CTCTCCCATA ATGCGCCATT CCGCGTCATC
AATATCGGCG GCGGCCAGCC GATTGCACTG ATGGATTTCA TCGAAACCAT CGAGACCATC
ATGGGCCGCC CGACCAAGCG CAAAATGCTG CCGATGCAGC AGGGTGACGT GCCACGCACC
TTTGCCAGCC CCGACCTGCT GGTGGCGCTC ACCGGCCAGA AACCGACGAC AACACTGGAT
GTCGGCGTCA AGGCCACCAT GGACTGGTAT CTGGAGCATT ATCGCCAGCT TGGGCTGTGA
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| Protein sequence | MRYFITGTAG FIGFHLARRL LQDGHTVTGY DGMTAYYNLK LKEARNAALA QFPNFSGVIG
MLEDRDALER AVDQAKPDVI IHLAAQAGVR YSLENPKAYL DSNLIGSWNI VEIARQLQIG
HLMLASTSSI YGANPQVPFR ETDRADEPMT FYAASKKGME LMAHSYAHLY KVPTTAFRFF
TVYGPWGRPD MALFKFMKAM LADEAIEIYG EGKMSRDFTY IDDLIDSVIA LSAIAPSEEN
RVRTPENLDT LSHNAPFRVI NIGGGQPIAL MDFIETIETI MGRPTKRKML PMQQGDVPRT
FASPDLLVAL TGQKPTTTLD VGVKATMDWY LEHYRQLGL
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