| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3922 |
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| Symbol | pbpC |
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| ID | 7387279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3285117 |
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| End bp | 3287204 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643652663 |
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| Product | penicillin-binding protein |
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| Protein accession | YP_002550844 |
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| Protein GI | 222149887 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.731246 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCCGGC GCAGCAAGAC ATTCAGCTTG GTGCTGCTGA CCTGCCTGCT TGTGGGCGGG
GCGGTTTGGC ATGGGCTGAA CCGGCTGGAT GCGGCCTTCC CGCCGCCGCT TGATGCGATC
AGCCCGAATT CGGCGGAACT TCTGGATGCC GATGGGCAAT TGCTGCGGGC CTTCACCACG
CAGGAAGGCC GCTGGCGGCT GAAAACCGTG GCCGCCGATG TCGATCCTTT GCTGGTACGC
ATGCTGGTCG CTTATGAGGA CCGGCGTTTC TATCAGCATT CCGGTGTCGA TGGGCTGGCG
CTTGGTCGGG CGGCTCTTCA ACTCATCCGC CATGGCCGGA TCGTGTCAGG TGCCTCAACG
CTGTCCATGC AGGTGGCAAG GCTGATCGAA CCTCGAAAAT CACGCTCCTT TCTGGCCAAG
ACCCAGCAGG CATTGCGGGC CATCCAGATC GAGCACCGGT TGGACAAGGC CGCCATTCTC
GATCTCTACC TGACGCATGC CCCCTATGGC GGCAATCTCG AAGGGGTGCG GGCCGCCTCG
CTTGCCTATT TCGGCAAGGA GCCGAAACAT CTGACGCCTG CGCAAGCAGC ACTGCTTGTC
GCCCTGCCGC AATTGCCGGA ACGGCGGCGG CCCGACCGCT TTGCCGATAA CGCCCTTGCC
GCCCGCGACC GGGTGCTGGC CCGCATGGAA AAAGCCGGCA TTGTTTCTGC GCAGGACCGG
CAATTGGCAA GCGCCGTGCC GATCCCGCAG ACAAGGCTGG AATTGCCGAT GCTCGCGGCC
CATGTCGGCG ATGCCGAGCG ACGCAAGCGG CCAGAAAGCC TGACCTATCC GACCACACTC
AAAAAAGACG CGCAGGCCGC GCTGGAAACC GTGGCGAGAC AAGCCGCCCA AAGACTTCCG
CCAAAAGTTT CCGTGGCAAT CCTGGCCGCC GACATCCGCA CCGGCGAGAT CCTCGCCCGG
GTCGGTTCCG CCGCCTATCT CGATGCCAGC CGCTCCGGCT GGATCGACAT GACGCGCATC
AAGCGATCGC CGGGCTCGAC GCTGAAGCCG CTGATCTACG GCCTGGCTTT CGAGCAGGGC
CTGATCGCCC AGGATACGGT GATCGAAGAC CGTCCCGCCG ATTTCGCCGG CTATCGGCCG
AAAAATTTCG ACATGCATTA TCAGGGCGAC GTCACCATTC GCGATGCCCT GCAACTGTCG
CTGAACGTGC CGGCGGTCCG CTTGCTGGAA GCGGTCGGCC CTTCGCAATT GCTTGCCCGG
CTGAAACGAG CCGATATCAG GATCGATCTG CCCAAGGCAG AAACCCCGGG GCTGGCCATC
GCGTTGGGCG GTGCCGGTAC GACGTTGAAG GATCTCGTCG GGCTTTATGC CGCCCTTGCC
CGGCAAGGCA GCGCCATCCG ACTGCGCGAC TGCGCTATGC CCAGTGGCGC TCATGTTCAG
CCCGGACGCC TGCTGGAACC GGCAGCGGCC TGGAACGTCA CCGATATCCT GTCCGGCGTC
GCCCCGCCGC TTGGCGCGCT GACTGGTCGG ATCGCCTATA AAACCGGCAC CAGCTACGGC
TACCGCGATG GCTGGTCTAT CGGTTATGAT GGCCGCACGG TGATTGGTGT GTGGATTGGC
AGGGCGGATA ACAGTGCCAT TCCCGGCCTG ACCGGCTATG GCACCGCAGC CCCTGTTTTG
TTTGAGGCTT TTGCCCGGTC CAAACTGCCG CAAGCCCCCC TGCCCCCGCC GCCGGAGGGC
GCCTTGCGGA TCGCCAAGAG CGATCTGACA CCCGGCCTCA GGCGCTTCTC ACGCGACGCC
AGCGGCTTGA TTGCCCTCAA TGCGCGCGAA AAACCGCCGA TGATCGTCTA TCCCCCGGAA
GGCGCCCATG TGGAACTCGG CCGGACCGCC GATGGCGCGC AGCTCCCGCT GGTGCTGAAA
CTTCAGGCGG GCCGCGCGCC CTTCCGCTGG CTGGCCAATG GACAGGCCTT GCCGGATCTC
GCCCGCACCC GCACCACCCG CTGGACACCC GATGGCAATG GTTACTCGAC ACTAACGGTG
ATCGATGCGA GCGGGCGTAG TGCCAGCGTT GGCATTTTCC TTCAATAA
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| Protein sequence | MIRRSKTFSL VLLTCLLVGG AVWHGLNRLD AAFPPPLDAI SPNSAELLDA DGQLLRAFTT
QEGRWRLKTV AADVDPLLVR MLVAYEDRRF YQHSGVDGLA LGRAALQLIR HGRIVSGAST
LSMQVARLIE PRKSRSFLAK TQQALRAIQI EHRLDKAAIL DLYLTHAPYG GNLEGVRAAS
LAYFGKEPKH LTPAQAALLV ALPQLPERRR PDRFADNALA ARDRVLARME KAGIVSAQDR
QLASAVPIPQ TRLELPMLAA HVGDAERRKR PESLTYPTTL KKDAQAALET VARQAAQRLP
PKVSVAILAA DIRTGEILAR VGSAAYLDAS RSGWIDMTRI KRSPGSTLKP LIYGLAFEQG
LIAQDTVIED RPADFAGYRP KNFDMHYQGD VTIRDALQLS LNVPAVRLLE AVGPSQLLAR
LKRADIRIDL PKAETPGLAI ALGGAGTTLK DLVGLYAALA RQGSAIRLRD CAMPSGAHVQ
PGRLLEPAAA WNVTDILSGV APPLGALTGR IAYKTGTSYG YRDGWSIGYD GRTVIGVWIG
RADNSAIPGL TGYGTAAPVL FEAFARSKLP QAPLPPPPEG ALRIAKSDLT PGLRRFSRDA
SGLIALNARE KPPMIVYPPE GAHVELGRTA DGAQLPLVLK LQAGRAPFRW LANGQALPDL
ARTRTTRWTP DGNGYSTLTV IDASGRSASV GIFLQ
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