Gene Avi_3903 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3903 
SymbolchvE 
ID7388582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3264594 
End bp3265658 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content58% 
IMG OID643652649 
Productsugar binding protein 
Protein accessionYP_002550830 
Protein GI222149873 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4213] ABC-type xylose transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAGACAC TCGTAAAACT TTTTGCGTCC ATCGCTTTGG GCGCAGCCGT CATGTCGTCG 
TCTGTATTTG CAGCCGACAA GGGCACGGTT GGCATTGCCA TGCCAACAAA GTCTTCGGCC
CGCTGGATCG ATGACGGCAA CAACATCGTC AAGCAGCTCA AGGAAGCCGG TTACACCACC
GACCTTCAGT ATGCTGACGA CGATATCCCG AACCAGCTCT CGCAGATCGA GAACATGGTC
ACCAAGGGCG CCAAGGTTCT GGTCGTCGCC GCCATCGACG GCACGACACT GTCCGACGTG
CTGAAGCAGG CCCATGACGC GGGCATCAAG GTCATTGCCT ATGACCGCCT GATCCGCGAC
AGCGCCAATG TCGATTACTA CGCAACCTTC GACAACTTCC AGGTCGGCGT CTTGCAGGCT
GGCACGCTGG TTGACGGCCT CGGCCTCAAG GACGGCAAAG GTCCGTTCAA CATCGAGCTG
TTCGGCGGCT CGCCTGACGA CAACAACGCC TTCTTCTTCT ACAATGGCGC AATGTCGGTT
CTCCAGCCTT ACATCGACAG CGGCAAGCTG GTCGTGAAGT CCGGCCAGAC CGGCATGGAC
AAGGTCGGTA CGCTGCGTTG GGATGGTGCC GTTGCCCAGG CCCGTATGGA TAACCTGCTG
TCGGCCTATT ACACCGACGC CAAGGTCAAT GCCGTTCTGT CTCCTTATGA CGGTATCTCC
ATCGGCATCA TTTCCTCGCT GAAGGGCGTT GGCTACGGTT CCAAGGACCA GCCGCTGCCA
TTCATCTCCG GTCAGGATGC TGAAGTGCCT TCGGTCAAGT CGATCATTGC CGGTGAGCAG
TATTCGACGA TCTTCAAGGA CACCCGCGAT CTCGCCAAGG TGACCGTTTC CATGGTCAAC
GCGCTGATGG AAGGCAAGAC GCCTGAAGTC AACGACACCA AGACCTACGA CAACGGCGTC
AAGGTGGTTC CGGCTTACCT GCTGAAGCCC GTTGCTGTGA CCAAGGCCAA CTACGAAAAG
GTCCTGGTTG AAGGCGGCTA CTACAAGGCC GACCAGCTGA AGTAA
 
Protein sequence
MKTLVKLFAS IALGAAVMSS SVFAADKGTV GIAMPTKSSA RWIDDGNNIV KQLKEAGYTT 
DLQYADDDIP NQLSQIENMV TKGAKVLVVA AIDGTTLSDV LKQAHDAGIK VIAYDRLIRD
SANVDYYATF DNFQVGVLQA GTLVDGLGLK DGKGPFNIEL FGGSPDDNNA FFFYNGAMSV
LQPYIDSGKL VVKSGQTGMD KVGTLRWDGA VAQARMDNLL SAYYTDAKVN AVLSPYDGIS
IGIISSLKGV GYGSKDQPLP FISGQDAEVP SVKSIIAGEQ YSTIFKDTRD LAKVTVSMVN
ALMEGKTPEV NDTKTYDNGV KVVPAYLLKP VAVTKANYEK VLVEGGYYKA DQLK