Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3903 |
Symbol | chvE |
ID | 7388582 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3264594 |
End bp | 3265658 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643652649 |
Product | sugar binding protein |
Protein accession | YP_002550830 |
Protein GI | 222149873 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGACAC TCGTAAAACT TTTTGCGTCC ATCGCTTTGG GCGCAGCCGT CATGTCGTCG TCTGTATTTG CAGCCGACAA GGGCACGGTT GGCATTGCCA TGCCAACAAA GTCTTCGGCC CGCTGGATCG ATGACGGCAA CAACATCGTC AAGCAGCTCA AGGAAGCCGG TTACACCACC GACCTTCAGT ATGCTGACGA CGATATCCCG AACCAGCTCT CGCAGATCGA GAACATGGTC ACCAAGGGCG CCAAGGTTCT GGTCGTCGCC GCCATCGACG GCACGACACT GTCCGACGTG CTGAAGCAGG CCCATGACGC GGGCATCAAG GTCATTGCCT ATGACCGCCT GATCCGCGAC AGCGCCAATG TCGATTACTA CGCAACCTTC GACAACTTCC AGGTCGGCGT CTTGCAGGCT GGCACGCTGG TTGACGGCCT CGGCCTCAAG GACGGCAAAG GTCCGTTCAA CATCGAGCTG TTCGGCGGCT CGCCTGACGA CAACAACGCC TTCTTCTTCT ACAATGGCGC AATGTCGGTT CTCCAGCCTT ACATCGACAG CGGCAAGCTG GTCGTGAAGT CCGGCCAGAC CGGCATGGAC AAGGTCGGTA CGCTGCGTTG GGATGGTGCC GTTGCCCAGG CCCGTATGGA TAACCTGCTG TCGGCCTATT ACACCGACGC CAAGGTCAAT GCCGTTCTGT CTCCTTATGA CGGTATCTCC ATCGGCATCA TTTCCTCGCT GAAGGGCGTT GGCTACGGTT CCAAGGACCA GCCGCTGCCA TTCATCTCCG GTCAGGATGC TGAAGTGCCT TCGGTCAAGT CGATCATTGC CGGTGAGCAG TATTCGACGA TCTTCAAGGA CACCCGCGAT CTCGCCAAGG TGACCGTTTC CATGGTCAAC GCGCTGATGG AAGGCAAGAC GCCTGAAGTC AACGACACCA AGACCTACGA CAACGGCGTC AAGGTGGTTC CGGCTTACCT GCTGAAGCCC GTTGCTGTGA CCAAGGCCAA CTACGAAAAG GTCCTGGTTG AAGGCGGCTA CTACAAGGCC GACCAGCTGA AGTAA
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Protein sequence | MKTLVKLFAS IALGAAVMSS SVFAADKGTV GIAMPTKSSA RWIDDGNNIV KQLKEAGYTT DLQYADDDIP NQLSQIENMV TKGAKVLVVA AIDGTTLSDV LKQAHDAGIK VIAYDRLIRD SANVDYYATF DNFQVGVLQA GTLVDGLGLK DGKGPFNIEL FGGSPDDNNA FFFYNGAMSV LQPYIDSGKL VVKSGQTGMD KVGTLRWDGA VAQARMDNLL SAYYTDAKVN AVLSPYDGIS IGIISSLKGV GYGSKDQPLP FISGQDAEVP SVKSIIAGEQ YSTIFKDTRD LAKVTVSMVN ALMEGKTPEV NDTKTYDNGV KVVPAYLLKP VAVTKANYEK VLVEGGYYKA DQLK
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