Gene Avi_3891 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3891 
Symbol 
ID7388571 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp3251196 
End bp3251891 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content59% 
IMG OID643652638 
Producttranscriptional regulator GntR family 
Protein accessionYP_002550819 
Protein GI222149862 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.556155 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGATA CGGTCAATGT GCGCACGCTG GACGTTCAGC GGCAACCTTC GGTCACCGAG 
CAGGTCTTCG AGCTGTTATA CCGGCAGGTG GTTGAACTGG AGCTGCCGCC CGGGGCAAAA 
TTGTCGGAAG TGGATGTTGC CAAGCAGATG GGTGTGTCGC GCCAACCGGT GCGCGACGCC 
TTCTATCGCC TGTCGCAGCA GGGCTTCCTG ATGATCCGCC CGCAACGGGC AACCGTGGTG 
ACGCATATTT CCGAGCGTGG GGTTTTGCAG GCCCGCTTCA TCCGCACAGC GCTGGAAATG 
GAAACCGTGC GAGCCGCCGC CGAGCGGTTG AGCGAAGAGC AGATCGCGGC GCTCGACGAA 
TTGGTGCAGC GGCAGATCAA GGCCATGGAG GCTGGCGACA AGATGCTGTT TCATGAGTTG 
GATGACGAGT TTCACCGGCA GATCTGCAAG ATGTCCGGCC ACGAATTCGC CTGGGCGCTG 
ATCCGCGACA GCAAGGCGCA TATGGACCGA ATCCGCTATC TCAGCCTTGC TTTTGGTGCG 
CAAAGCGCCA TTGACGACCA TATCGAGATT ATGGCCGCGC TGAAGGCACG CGATGGCGAC 
CGGGCTGCGG CCAACATGCG TGTTCACCTG TCACGTATCT TGTCGATCAT CAGCCGGATC 
AGGGAAACCC AAGGCCAGTA TTTCGCGACC GAATGA
 
Protein sequence
MIDTVNVRTL DVQRQPSVTE QVFELLYRQV VELELPPGAK LSEVDVAKQM GVSRQPVRDA 
FYRLSQQGFL MIRPQRATVV THISERGVLQ ARFIRTALEM ETVRAAAERL SEEQIAALDE 
LVQRQIKAME AGDKMLFHEL DDEFHRQICK MSGHEFAWAL IRDSKAHMDR IRYLSLAFGA 
QSAIDDHIEI MAALKARDGD RAAANMRVHL SRILSIISRI RETQGQYFAT E