Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3891 |
Symbol | |
ID | 7388571 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3251196 |
End bp | 3251891 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643652638 |
Product | transcriptional regulator GntR family |
Protein accession | YP_002550819 |
Protein GI | 222149862 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.556155 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTGATA CGGTCAATGT GCGCACGCTG GACGTTCAGC GGCAACCTTC GGTCACCGAG CAGGTCTTCG AGCTGTTATA CCGGCAGGTG GTTGAACTGG AGCTGCCGCC CGGGGCAAAA TTGTCGGAAG TGGATGTTGC CAAGCAGATG GGTGTGTCGC GCCAACCGGT GCGCGACGCC TTCTATCGCC TGTCGCAGCA GGGCTTCCTG ATGATCCGCC CGCAACGGGC AACCGTGGTG ACGCATATTT CCGAGCGTGG GGTTTTGCAG GCCCGCTTCA TCCGCACAGC GCTGGAAATG GAAACCGTGC GAGCCGCCGC CGAGCGGTTG AGCGAAGAGC AGATCGCGGC GCTCGACGAA TTGGTGCAGC GGCAGATCAA GGCCATGGAG GCTGGCGACA AGATGCTGTT TCATGAGTTG GATGACGAGT TTCACCGGCA GATCTGCAAG ATGTCCGGCC ACGAATTCGC CTGGGCGCTG ATCCGCGACA GCAAGGCGCA TATGGACCGA ATCCGCTATC TCAGCCTTGC TTTTGGTGCG CAAAGCGCCA TTGACGACCA TATCGAGATT ATGGCCGCGC TGAAGGCACG CGATGGCGAC CGGGCTGCGG CCAACATGCG TGTTCACCTG TCACGTATCT TGTCGATCAT CAGCCGGATC AGGGAAACCC AAGGCCAGTA TTTCGCGACC GAATGA
|
Protein sequence | MIDTVNVRTL DVQRQPSVTE QVFELLYRQV VELELPPGAK LSEVDVAKQM GVSRQPVRDA FYRLSQQGFL MIRPQRATVV THISERGVLQ ARFIRTALEM ETVRAAAERL SEEQIAALDE LVQRQIKAME AGDKMLFHEL DDEFHRQICK MSGHEFAWAL IRDSKAHMDR IRYLSLAFGA QSAIDDHIEI MAALKARDGD RAAANMRVHL SRILSIISRI RETQGQYFAT E
|
| |