Gene Avi_3883 details

Gene Information

• Locus tag: Avi_3883
• Symbol: phnM
• ID: 7388563
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3242513
• End bp: 3243679
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643652630
• Product: phosphonate metabolism protein PhnM
• Protein accession: YP_002550811
• Protein GI: 222149854
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3454] Metal-dependent hydrolase involved in phosphonate metabolism
• TIGRFAM ID: [TIGR02318] phosphonate metabolism protein PhnM

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.414273
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACATGA GCGGTAAGAC ACCTTCGAAA CGCCTGGTCC TGACCAATGC CGCCCTTGTC 
CTTGCCGACC GCATACAGAC CGGCACGGTC GAAATTGAAA ACGGCCAGAT CATCGCCATC 
GGCCCGTTAA CCCATGCCAG CGACGCCATC GACCTTGGTG GCGACATGCT GATCCCAGGC 
CTCGTCGATA TCCACACCGA CCATTTCGAA AAGCATGTCT TTCCCCGCCA CCATGTCCGC 
TGGAACTATA CGACGGCGGC CCTTGCCCAT GACGCGCAAA TCATCGGCGC CGGCATTACC 
ACCGTGTTCG ACAGTCTCTG CGTCGGCGCA GCGGAAGACG GCAGCGAGCG GGCGGAAATC 
CTCGGGCCAA TGATCGAGGC GCTGGAAAAG GCTCAAGGTG CTGGCATGTT GCGGGCCGAG 
CATTTCGTGC ATCTGCGCTG CGAAGTGATC GATGAACAAA CGCCTGCGCT GATGGAAGCC 
AATATTGGCC ATGCTCTGGT GCGCGTCGTC TCTGTCATGG AGCATCTGCC CGGTATCCGC 
CAGACGCGAG ATCTCGACAC CTATCTGGCC AAGGTCGCGA AATTGCGCGG CGAAGCCCTT 
GCTGTGACCA CAGCACGGGT TGCGGACCTG ATCACCGCCA AACAGGCCAT TGGCAACAGA 
ATCCGCCCAC AGGTGGTGGA TATCGCCAAG CGCCACAACA AGCCGCTGCT CAGCCATGAC 
GATACCGATA TCGAGCATGT CGATCTCGCC GCTGACGAAG GCGTATCGAT CAGCGAATTT 
CCCTGCACGC TGGAGGCCGC CCGCGAAGCC CGCAAACGTG GCATGCAGAT CGTCGGCGGC 
GCACCGAATA TCGTGCGCGG CGGCTCACAA TCCGGCAATG TGGCAGTGCG TGATCTGCTG 
CTCGAAGGCC TCTGCGATAT CCTCGCCTCC GATTATGTAC CACGCGCCCT GCTGGACGCC 
CCCTTCGCCA TCGCCGCCGA CCCAGACCTC GCCTACGACC TGCCCGCCGC GATCCGCATG 
GTCAGCAAGA CCCCGGCAGA AGCCTCCGGC CTCAACGACC GCGGCGAGAT CGCGCTGGGC 
AAGCGCGCCG ACCTCTTGCA AATTGGCCAG CATGGCGGCC ATCCGTTCAT CAAGCAGATC 
TGGCGTGAAG GGGTGCGGGT TGGGTGA 

 

Protein sequence

MDMSGKTPSK RLVLTNAALV LADRIQTGTV EIENGQIIAI GPLTHASDAI DLGGDMLIPG 
LVDIHTDHFE KHVFPRHHVR WNYTTAALAH DAQIIGAGIT TVFDSLCVGA AEDGSERAEI 
LGPMIEALEK AQGAGMLRAE HFVHLRCEVI DEQTPALMEA NIGHALVRVV SVMEHLPGIR 
QTRDLDTYLA KVAKLRGEAL AVTTARVADL ITAKQAIGNR IRPQVVDIAK RHNKPLLSHD 
DTDIEHVDLA ADEGVSISEF PCTLEAAREA RKRGMQIVGG APNIVRGGSQ SGNVAVRDLL 
LEGLCDILAS DYVPRALLDA PFAIAADPDL AYDLPAAIRM VSKTPAEASG LNDRGEIALG 
KRADLLQIGQ HGGHPFIKQI WREGVRVG