| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3881 |
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| Symbol | |
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| ID | 7388561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3240157 |
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| End bp | 3241197 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652628 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002550809 |
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| Protein GI | 222149852 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.266197 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGAAGC CCCAGAAATT CGCCCTTGCC TTCGTTGTCG TTCTGCTTGC CGCATCCGGC
GGCACCTATG CCTATTTGAA ATTCGGGCGA GCCGATACGC TGCCGTCAGG CATCGTCACG
GGCAATGGCC GGATCGAGGC GACCGAGGTC GATATTGCCA GCAAAAGCGC AGGCCGGCTG
GTCTCCGTCG AAGTCGGCGA GGGCGATTTG GTCACCAAGG GCCAGGTGCT GGCGCATATG
GATACGGTGG AACTGCAAAG CCAGTTGCGC GCGGCAAAGG CCAAGATCGC CGAAGCCGAA
CAGAGCCGCG ATGCTTCGGC GTTCAAATTG TCTCAGGCAC AAAGCCAGCT CGATCTGGCC
GAAAAGGATC TGGAGCGCAA GCTGGTCCTG CTCGGCAAGG GTTTCGTTTC CGATCAGGCG
GTTGACAGTC AGCGGCTGAC CCGTGACAGC GACAAGGCGG CGGTCTCGGC GGCCGAGAGC
ACGTTGAACA GCGTGCAGGC GACCATCGAC AATGCCAAGG CGGAGGCCGA CCGCATCGCC
CAGACCGTTG CCGATGCGAC GCTGACGGCG CCGAAGGACG GGCGGGTGCT TTACCGGCTT
GCGGAGCCGG GCGAGGTGCT GGCGGCGGGC GGCAAGGTGT TGACCGTGCT TGATCTGTCG
GATGTTTATA TGACGATCTA TCTTCCGTCT GCGGACGCCG CGAAAACCGC AATCGGTGCC
GAGGGCCGTA TCCTGCTCGA TATTCTGCCG GACCGGGCCA TTCCCGGAAC GGTGTCCTTC
GTCTCGCCGC AGGCGCAATA TACGCCGAAA CAGGTGGAAA TCCGCAGCGA GCGCGACCGA
TTGATGTTCC GCGTCAAGAT CAGCGCACCG AAGGAACTGG TAAAGCAATA TCTGCCGCTC
GTCAAAACCG GGATCACCGG TCTTGGCTAT GTGAAGACCG ATGCGGCCGC GGTCTGGCCG
GATCGGCTGC AATCCGATCT GACGACAGCG CCTCTCGACC CTTCGGCTTC GAATACCCAA
CCTTCCGCCA ATAAGCCTTA A
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| Protein sequence | MQKPQKFALA FVVVLLAASG GTYAYLKFGR ADTLPSGIVT GNGRIEATEV DIASKSAGRL
VSVEVGEGDL VTKGQVLAHM DTVELQSQLR AAKAKIAEAE QSRDASAFKL SQAQSQLDLA
EKDLERKLVL LGKGFVSDQA VDSQRLTRDS DKAAVSAAES TLNSVQATID NAKAEADRIA
QTVADATLTA PKDGRVLYRL AEPGEVLAAG GKVLTVLDLS DVYMTIYLPS ADAAKTAIGA
EGRILLDILP DRAIPGTVSF VSPQAQYTPK QVEIRSERDR LMFRVKISAP KELVKQYLPL
VKTGITGLGY VKTDAAAVWP DRLQSDLTTA PLDPSASNTQ PSANKP
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