| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3880 |
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| Symbol | |
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| ID | 7388560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3237401 |
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| End bp | 3240145 |
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| Gene Length | 2745 bp |
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| Protein Length | 914 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652627 |
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| Product | ABC transporter nucleotide binding/ATPase protein |
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| Protein accession | YP_002550808 |
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| Protein GI | 222149851 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.859575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAACG CTGTCGAACT GGCAGGCCTG TCCCATTTCT ATGGTAAGCG CCAGGCCTTA
AGCGCCATCG ACCTCGCCAT CGAGGCGGGA TCGCGGGTGG CCCTGGTCGG GCCGGACGGG
GTGGGCAAAT CCACACTTCT GGCGCTGCTG GCGGGCGCAA AAAAAATCCA ACAAGGCCGG
ATCACGGCGC TTGGGGCGGA TATGGCGAGC GCCGGTGCGC GCACCGACGT GCAGCCGCGC
ATCGCCTATA TGCCACAGGG CCTGGGCCGC AACCTCTATC CGAACCTGAC GGTTGTCGAG
AATATCGACT TCTTCGGCCG GCTGTTCGGG CAGGACGCGA CGGAACGGGC CGGGCGTATT
GACCGGCTGC TGAAGGCGAC CGGGCTCGAT CCGTTCGGTG ACCGGCTGAT GGGCAAGCTG
TCGGGCGGCA TGAAGCAGAA GCTCGGCCTG TGCTGCGCCC TGGTGCACGA TCCCGATCTC
CTGCTGCTCG ATGAGCCGAC GACCGGTGTC GATCCCTTGT CACGGCGGCA GTTCTGGGAC
CTGGTGGAGA GCATCCAGGC CTCGCGGCCC GGCCTGACCA TTATCACCGC CACGTCAGAC
ATGGAGGAGG CGAGCCGGTT CCAGCGCGTG GTTCTGGTGC ACGATGGCCG TATCCTGGCG
GATGGCACCT GCGAGACCCT GCTGCAACAA ACCGGGCGAC AAACCCTAGA ACAGGCTTTC
ATTGCGCTTC TGCCGGATGA GGCAAAACAG GGCTATGGCG ATCCGCCGCC CAGGCTTGCT
TTCGTGGATC GGGGCGAGGT TGCCATCGAG GCCAAGGAGC TGACCCGGTC ATTCGGGGCT
TTTACCGCCG TTGATCATGT CAGCTTCCGC ATTCCCAAGG GCGAAATTTT CGGCTTCCTC
GGTTCGAATG GCTGTGGGAA ATCCACCACC ATGAAAATGC TGACCGGGCT TTTGCCAGCC
AGTAGCGGCG AGGCGCGGCT GTTTGGCCAG TCGGTCGATG CCAAGACGGG TGCCGGCGAT
GTCGATGCTC GCCGTCGGGT CGGTTACATG TCGCAGGGCT TTTCGCTGTA TGCCGAATTG
ACGGTGCAGC AGAATCTCAA CCTGCATGCG GCGATTTTCG ACCTGACCGG GGAGGCGGCC
AAGGCGCGGA TCGAGACCGT GGCGCAGCAG TTCGGCCTTC AGCCCTATTT GCAGTTCCTG
TCGAGCGATC TGCTGCTCGG GGTGCGCCAG CGCCTGCAAC TGGCCGTGGC GCTGATCCAC
CAGCCGGATA TCCTGATCCT CGACGAGCCG ACATCCGGCG TCGATCCGCT GGCGCGTGAC
GGCTTCTGGA ACGATCTGGT GGAGCAATCG CGGCAAAACG GCGTGACAAT TTTCGTCTCC
ACCCATTTCA TGGCCGAAGC CGAGCGTTGC GACCGGATCG CCTTCATGCA TGCAGGCAAG
GTGATTGCCA GCGGCACCCC GCAGGAGCTG AAGGAGCAGA CCGGCAGCGC CAGCCTCGAC
GATGCCTTCG TCGCCTTCAT GAAGGCGGGA GGACGACAGG AAAACCTGAC TGATGCAGCA
ACCCAGCCGC AGGCCGGTGC CGCAACGGTG GTGGAGAACG CTGCCGGGGC CTTGGTGCGC
AAGGGGTTTT CTCCGGCCCG GCTCATGGCC TATGCGCGGC GCGAGACGAT GGAGCTGATG
CGCGACAAGA TCCGGCTTGG TTTCGCCCTG GCTGGCACGG CGCTGCTGAT GCTGATTTTC
GGCTACGGCC TGACGCTGGA TGTCGACCAT CTGCGGTTTG CGGTGCTCGA CCGCGACCAG
AGCGCCGAGA GCCGGGCCTA TATCGATGCC TATTCGGCCT CCACCGCCTT CACCCTGCAA
CCGGCCATCT CAGATGAAGC CGGGATGCTG TCGCGGTTGA AGGCCAACGA CATTATGCTG
GCGCTTGATA TACCCGAGAA ATTCGGCGCT GATCTGCGGG CCGGCAAGCG GCCGAACGTG
CTGGCCATGT TGGACGGCGC CATGCCGTTC CGTGGTGAGA CGGCGCTCGG CTATGTCTCC
GGTGCCCATC AGCGGTTCTT GCAGGAGATT GTCCGTCAGT CTGGAGGAAC GATCCGGTCG
GTGGCTGGCG TGGAAATGCG TTACCGCTAC AATCAGGCTT TTCTCAGCCT GAATGCCATG
GTGCCAGCGG TGATCGCCCT GCTGCTGGTG TTCATTCCCT CGATCCTGAC GGCGCTCGGT
GTCGTGTCGG AAAAGGAAAT GGGGTCGATC AGCAATCTCT ACGTGACGCC GGTCACCAAG
CTGGAATTTC TGCTGGGCAA GCAATTGCCC TATGTGGCCA TCGGCTTCAT CAACTTCCTG
ATGATGTTCC TGCTGTCCGT CTGGCTGTTC GGTGTGCCGT TGAAAGGCTC TCTTGCCGGT
CTATCGGTGG CTGCTTTTGT CTATGTGCTG GCGACAACCT CAATCGGTAT TTTAAGCTCA
ACCTTCACCT CAACCCAGGT GGCGGCCCTG TTCGTCACCG CCATCGGCAC GATGATGCCC
GGTACGCAAT TTTCCGGCTT GTTGCAGCCG GTGTCGTCGC TGCAGGGCAT GGGCCACGTC
ATCGGCCTGG TGTTTCCCAC CACCTATTTC ATGCGCGCCA GCGTCGGGGC TTTCACCAAG
GGGTTGGGCT TTGTCGAGCT AATGGGCTTC GTCTGGCCGC TGGCCCTGTT CTGGATTGGC
GCCATCGGGC TTGGCTGGTC GCTGCTGCGC AAGCAGGAAA GGTAA
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| Protein sequence | MENAVELAGL SHFYGKRQAL SAIDLAIEAG SRVALVGPDG VGKSTLLALL AGAKKIQQGR
ITALGADMAS AGARTDVQPR IAYMPQGLGR NLYPNLTVVE NIDFFGRLFG QDATERAGRI
DRLLKATGLD PFGDRLMGKL SGGMKQKLGL CCALVHDPDL LLLDEPTTGV DPLSRRQFWD
LVESIQASRP GLTIITATSD MEEASRFQRV VLVHDGRILA DGTCETLLQQ TGRQTLEQAF
IALLPDEAKQ GYGDPPPRLA FVDRGEVAIE AKELTRSFGA FTAVDHVSFR IPKGEIFGFL
GSNGCGKSTT MKMLTGLLPA SSGEARLFGQ SVDAKTGAGD VDARRRVGYM SQGFSLYAEL
TVQQNLNLHA AIFDLTGEAA KARIETVAQQ FGLQPYLQFL SSDLLLGVRQ RLQLAVALIH
QPDILILDEP TSGVDPLARD GFWNDLVEQS RQNGVTIFVS THFMAEAERC DRIAFMHAGK
VIASGTPQEL KEQTGSASLD DAFVAFMKAG GRQENLTDAA TQPQAGAATV VENAAGALVR
KGFSPARLMA YARRETMELM RDKIRLGFAL AGTALLMLIF GYGLTLDVDH LRFAVLDRDQ
SAESRAYIDA YSASTAFTLQ PAISDEAGML SRLKANDIML ALDIPEKFGA DLRAGKRPNV
LAMLDGAMPF RGETALGYVS GAHQRFLQEI VRQSGGTIRS VAGVEMRYRY NQAFLSLNAM
VPAVIALLLV FIPSILTALG VVSEKEMGSI SNLYVTPVTK LEFLLGKQLP YVAIGFINFL
MMFLLSVWLF GVPLKGSLAG LSVAAFVYVL ATTSIGILSS TFTSTQVAAL FVTAIGTMMP
GTQFSGLLQP VSSLQGMGHV IGLVFPTTYF MRASVGAFTK GLGFVELMGF VWPLALFWIG
AIGLGWSLLR KQER
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