| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3876 |
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| Symbol | |
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| ID | 7388557 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3234328 |
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| End bp | 3235338 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643652624 |
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| Product | ABC transporter membrane spanning protein (oligopeptide) |
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| Protein accession | YP_002550805 |
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| Protein GI | 222149848 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTACCT ATACGATCCG GCGATTGCTG TTTGCCATCC CGACCCTGCT GATCATCAGC
TTCATCATTT TCGCGCTGCT GGCGATGGCG CCCAACAATC CGCTCGGCGA TTTGCCGCTA
ACGATCCCAC CGGAAGTGCG CGAACAGATG CGCGCCGCCC TTGGCCTCGA CCAGCCGATG
ATTGTGCGCT TTTTCCTGTG GCTGAAGCAG TTCTTCATCA ATGAGCCGCT GAATATTTTC
GAGCAGATCA CCGGCCTGAC CGTCGGTTCC GGCCAGCGTC TGCGGGTCCT GTCCTGGACC
ACCCGCAGCC CCGTCGTCGA CCTGATCGTC CAGCGCATGC CGCAGACGCT TTGGGTTGTC
GGCCTGTCCT ATGTGTTCGG CGTATTGCTG GCCATTCCGC TTGGCGTCAT CTCGGCCTAC
AAGCAATATT CGATCTTCGA TCAGATTGGC ACCTTCGTCT CTATGGTCGG CTATTCCGTG
CCGACCTTCT TTACCGGCGT GCTGCTGATC GTGATCTTCT CCTCGACCCT GCACTGGTTT
CCCTCGGTCT ACGATACCAA TCTCCAGGTC GTGGACTGGA CAAGCTTCGT CGCCCAGGTC
AAGCAGATGG TGCTGCCGGT CATGGTGCTG ACGCTCTATA ATACCTCGCA GATCAGCCGA
TTCGTGCGCG CTTCCATGCT GGACAATCTG CATCAGGACT ATGTGCGTAC CGCACGAGCC
AAGGGCGTCA AGGAAAAGAC CGTGCTGCTG GTGCATGTGC TGCGCAACAG CCTGATCCCG
GTTGTAACAG TGATTGCGCT CGGCGTGCCG ACGATCTTTT CCGGCGCGAT CATCACCGAG
CAGATTTTCC GGGTCAACGG TCTTGGCCAA TTGCTGATCA CCGCCATCCA GAGCGGCGAC
TTGCCGCTGG TGCAGACACT GACCTTCATC TTCGCCGTGC TGATCGTACT CTTCAATCTT
ATTGCCGACG TGTTGTACGG CATTCTCGAT CCGAGGATCC GCTATGACTG A
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| Protein sequence | MFTYTIRRLL FAIPTLLIIS FIIFALLAMA PNNPLGDLPL TIPPEVREQM RAALGLDQPM
IVRFFLWLKQ FFINEPLNIF EQITGLTVGS GQRLRVLSWT TRSPVVDLIV QRMPQTLWVV
GLSYVFGVLL AIPLGVISAY KQYSIFDQIG TFVSMVGYSV PTFFTGVLLI VIFSSTLHWF
PSVYDTNLQV VDWTSFVAQV KQMVLPVMVL TLYNTSQISR FVRASMLDNL HQDYVRTARA
KGVKEKTVLL VHVLRNSLIP VVTVIALGVP TIFSGAIITE QIFRVNGLGQ LLITAIQSGD
LPLVQTLTFI FAVLIVLFNL IADVLYGILD PRIRYD
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