| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3866 |
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| Symbol | |
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| ID | 7388549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3215675 |
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| End bp | 3220708 |
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| Gene Length | 5034 bp |
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| Protein Length | 1677 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652616 |
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| Product | TPR repeat protein |
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| Protein accession | YP_002550797 |
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| Protein GI | 222149840 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACGC ATGAGGTTTC GCAGTGCCGT TCGCTTTTGG CGCAGGGGCG CGTGGCTGAG
GCCTTACAGG GCTTGACGGC GCTTGTTGAG GCCCATCCTG AACATGCCGA GACCGCTCAT
TACTATGCGC TCGCCCTTCA TCTTTCCGGC CGTTCTCGTG AGGCCATTCC CGCTTTCGAA
CATGCTTTGC AACTTGCGCC AGACCAGTCC GGCCTGCTGC AAAATATGGT TCTTCCGTTG
ATTGCAGTGG GTGACCATCA GCGCGCCATT GATATCGGCG CTCGCGCCGT GACGCTTGAC
GGTAAAGCCG TTGGCGCATG GTCCAATCTG GTTCTGGCCC TGACATCGGC AAAACGATGG
GATGAAGCCC TGAATGCGGC TCGGCAGGGT CTGGCGCTTG ACAACAATGA ACCGTCTCTG
CTGGCTCAGA TGGGTGTCAT CCTGCTGGAG CTTGGAGACA GTGCGGGAGC CGAAACCCAT
TTGCGCCGGG CGCTGGAGCT GAAGCCGGAT GCCGAAGCTT TCTATAATCT CGGCGTGCTG
CTGCATGGAT TGCAACGCGA TCCCGAGGCC TGTGACAGCT ATACAAAGGC GCTGACGCTT
GATCCCTCGC ATCGACGCGC CGCCAATAAT CTGGCGGCAA GCCTGCGCAT TCTGGGCAAT
TTGAAGGGTG CTGACCGGAT TCTCAAGCAA TTGATTGGCA TCGGCGATGC CCCCGTTCAC
CGCTTCAACC GCGCCTGCCT GCAATTGCTG GACGGCCAAT GGAGCGAGGC CTGGGCCGAT
TACGAGTTGC GTGATCAGGC CACCGGGAGT TCCACCTCGC CCTTGCTGAT GCAGGGGCCG
CGCTGGCAGG GCGAAGCGCT GCAAGACCAG ACGCTGCTGG TGTTTCATGA GCAGGGATTG
GGCGATACAA TCCAGTTTAT CCGGTTTTTG CCGCGCATTG CGGACCGGGT CGGCCATGTG
GTTTTCGTCT GCCAACCGCA ACTCTACCGT CTGCTGAACC TTTCCGAACT TTTTGCCACT
CCGTCCATCA CGCTCTTGCC TGATGGTGCG GATCTGCCCG CTTACGCGGC CTGGGCACCG
CTCTTGTCGC TGCCGGGCCT GATCAACCTT GTGCCAGAGG CGACAGGCCA GCGCGTTCCC
TATCTCACCC TGGAAAAACA GCTTTTCGAG CGCTGGCGCG ACTGGCTTGG CGGGCTTTCT
CCAAGCCAGG AGCAAGAGCA GGAGAAGGAG AAGACACGTT TTCGTATCGG TCTATCCTGG
CAGGGCAATC CAAAGGCCTA TGGTGAGCCG GGCCGCTCGC TGCCGCTGGA ACTCTTCCAG
CCGCTTGCCG AATTCTCAGA TGAAATTGAC ATCATTTCCC TGCAAAAGGG GGTAGGAGCC
GATCAGCAAG CGCCGGAGGG ATTGGCGCTG CACCCCGTTC CGGGTCTGGA TGACGGTCCC
GATGCCTTTG TCGATACCGC AGCCTTGATG GCGTCGCTGG ATCTGGTCAT CACCTCAGAT
ACCGCCCTTG CCCATCTTGC GGGCGCATTG GGCAGGCCGG TCTGGCTGTT GCTGAAGAAA
GCCCCGGACT GGCGCTGGGG CATGGATGGC ATTCTGACCG ACTGGTACCC GACCATGCGG
CTGTTTCGCC AGATGGAGGC GGGGCAATGG CAACCGGTTC TTCAGGACGT TGCGCATGAG
TTGAAAGTGC TGCTGTTTGC CGGACGTGCC ACGGATGATG CGCCCGATGA GGCCGCTGAC
GGATTGAACG AGGCGATCAA GCGCCATCAG GGCCGCGATT ATGGCCGGGC CGTGCAGCTT
TACCGGCATG TGCTGACGCA GGATTTTCAA AGAGAGCGGG TGCTCAATCT GCTTGGCATG
GCGTGTCTAG AGGCCGGTGA ACGCTCATCG GTGGCAGGGC GGCAGGCCAT TCCCTTTTGC
GCCCGCGCGG TGGCGATCCG CCCCTCGCTT GGCGATCACT GGAGCAATTT CGCCATTGCG
CTCGATGCTG CGGGGCTTGT GACCGATGGG ATGCGGGCGC TGCGCCACGG GCTGCTCTAC
GATACCGGTC ACGCAGCGTG CCTTTTGGCG CTGGCCCGGC GCGAAACGTC GGTGGGTGAT
GCCGAAACAG CCTTCCGCCG CGCAGGCGAG GTGCTGAAAG CCCAGCCGCG CTCAGGTCAC
GCCCTGTCGG TTTATGCGGC GGCGGCGCTG GCGCTTGGCC GGTTCAACGT GGCGGAGGAA
GCTCTGCGAC GCGCCTGCCG GATCGAGCCG GAACTGGCCT CGCATCACGT GCAACTGGGT
GCTGTTCTGC TAAAAGCCAA GCAGCCGCAG GCCGCCGCGC GCGCCTGGGA AAAGGCTTTG
ACGCTTGACC CCGGCAATGC CGATGCCTGG AGCAATCTGG GTGTGGCGGA GCGTAATCAC
GGCTATGCCG ATCTTGCCTG CTGGATCCAG AGGCAAGGCG CGCTTGCCAA GCCCGGCCAT
GCCGAATCCT GGAGCAATCT CGGCATCAGC CTGATGGATA CCGGCCGCGA AGACGAGGCG
ATACTGGCTT TTGGCAAGGC GATCGAGGCC CGTCCCGGCT ATGCCGATGC GGAAATGGCG
CTGGGCATGT GTTTGCTGAA CGAGGGCGAT TATGCCCGTG GCCTGCCGCT TTACGAGCGT
CGCTTCCTGG TGGAAATCCT CGGCATAGAT CGCACCCGCG TCCGGCTGCC GGTCTGGCAG
GGGGAGGATC TGGCGGGCAA GTCCATTCTG GTTCTGGCCG AACAGGGCTT TGGCGATGCT
TTCCAGTTCG TCCGCTATGT GGCGCTCCTG AAGGAAAAAG GCGCGGCCAA GGTGATGATT
GGCTGCCGTC GCAAGATTGC CACGCTGCTG CAAACCGTGC CGGGAGTGGA TGGCGTTGTC
TGCGAAAGCG ATCCCGTCCC GCCGCTCGAT TACCACGTTT TCATGATGAG CTTGCCGCTG
CTTTGCGGCA CAGTCGTCGA GACAATCCCG GCTTTTCCCG CCTATCTGTT TGCCGATCCG
CTGCGGGTGC GGCGCTGGGC AGGCTGGCTT TCGGCAAAGC CTGGCTTCCG CGTCGGCCTC
GTTTGGCAGG GCAATCCCGA TCCACAGGTC GATAAGGGCC GCAGCTTTCC CTTGCAGGTG
TTGGCGCCGC TTGCCGCCAT TGACGGTGTG CGCCTGATCG CCTTGCAAAA GGGGGCAGGC
GAAGAGCAGT TGGACATGGT GGATTTTGTC GTCGAGCGCC CGCCGGAAGA GTTTGACAGC
GGTGCCGATG CCTTTGCGGA TACGGCAGCG ATGATCATGA ATCTCGATCT CGTCATCACC
TCCGATACGG CGGTGGCGCA CCTGGCTGGT GCGCTTGGCC GCCCGACCTG GGTAATCCTC
AAATCCCATG CCGAATGGCG CTGGCTGCGC GGACGCAGCG ATAGCCCCTG GTATCCGACA
AGCCGGGTGT TTCGCCGGGT GGCCGATGAG GTCGAAGCGG AACCCTTTGC CGGTGTCGTC
TCCCGCGTGG CCGACGCGCT TGGCAGGCTG GTCGAGGGTG ACAGGGCGCA ACTGTTTGAA
GCCGCCGAGC CTGTGGTTGC CGTTCCGGCC CAGCCGGGTC CGCAGCAACG ATTGGCCGCC
GCCATCCGCA CCCATATGGC CGGCAATGTC ACTGCCGCCG AGGCGACCTA TGCGGCGCTG
CTGCATGAGG ACGAAACACG GGCCGAGGCG CTGCATATGC TGGGCGGGTT GGCGGTTGAG
CGCCTGCATT ACCATCGCGG CTATGTCCTG CTGCGGGGCG CAGCGGCACT TGGCCTTGCA
ACGCCGACCT TCCAGACCAA TTATGCCATA GCCCTTCGCC ACGTCGGCAA GCAGGATGAG
GCCGAGGCCT GCCTGCGCCA AAGCCTGGAG ACCAGCCCCA GCGCCGAAGC CTATATGACG
CTTGGCAATC TTTTGCGCGA CACGGACCGC TATGGGCAAG CGCTGGAGGC TTACCGCGCC
TCGATCCAAT TGCGTCCGGA TCTGTCCAAG GCCCATCGCG GGCTTGGCAA TGCATTGCGC
GAAATGGGCC GGGTTGAGGA GGCAATCGCC AGTCTCGATC GGGCGCTGGA TCTCCTGCCT
GGTGATGTCG AAACCCTGAT CGACCGGGCG CATGCCCATT TGATGGCGGG CAATCTGCCG
CAGGGTTTTC GCGATTACGA GACGCGCTGG CAGGGTGCCG AAATGGTGGC GCGCTCGCTG
CCTATGCCGC GCTGGACTGG CGAGGCCCTG CCGGACAAAG TACTGCTGAT CCACGGAGAA
CAGGGGTTGG GCGACCAGAT CCAGTTTGCC CGTTTCGTGC GCCAAGCCGC TCTCAAGGTC
GGGCATGTCA TTCTGGAATT GCGTGAGCCG CTGATCAGCC TGTTTTCAAC GCTGGTGGTG
GAGAGGCGCA ACATCACCCT GCGCCGCCAG GGCGTCGATG CCATTGACGA TGCCGATGTC
GAAGCGCCGA TCATGAGCCT GCCGCTGATT TTTGCAACCA CGCTGGAAAC TTTGCCCGGC
CCGGCCAATT TCCGGCCCGA TCCTCGCCGG GTGGCGGATT GGGAAGCGCG GTTTGCGCAT
CGTGACGCTT TGCGGGTCGG GCTGGTCTGG CAGGGCAATC CGGTCGCGCG CGCTGACAAG
GGGCGCTCGC CGCCCTTGAA AGTGTTGGAG CCATTGTTTG CTGTCGAAGG AGCGCATTTC
ATCAGCCTGC AATTCAAGGA CGGGCTGGAA CAGATGGCCG GTCTGGAGTT TGCCAAGGCC
ATGCAGGTGC CGGGGTCAGA CCTTGGCGAT TTCGGCGAGA CGGCGGCAGC GATTGCTGCG
CTTGATCTGG TGATTTCCTC CTGCACCTCC ACTCTGCATC TTGCGGCATC GCTGGGCGTG
CCATGCTTTG CGCTGCTGAA ATACGGTGCG GATTGGCGCT GGATGACCGG TCGAGACGAT
AGCCCCTGGT ATCCGGGCCT GAAACTGTTT CGCCAACCGC AACCAGGCGA TTGGGCAAGT
GTGGCCAAGG CGGTGGCAGA AGACCTTAAA CGGTTGGTGG AGCGTAAGCC ATGA
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| Protein sequence | MTTHEVSQCR SLLAQGRVAE ALQGLTALVE AHPEHAETAH YYALALHLSG RSREAIPAFE
HALQLAPDQS GLLQNMVLPL IAVGDHQRAI DIGARAVTLD GKAVGAWSNL VLALTSAKRW
DEALNAARQG LALDNNEPSL LAQMGVILLE LGDSAGAETH LRRALELKPD AEAFYNLGVL
LHGLQRDPEA CDSYTKALTL DPSHRRAANN LAASLRILGN LKGADRILKQ LIGIGDAPVH
RFNRACLQLL DGQWSEAWAD YELRDQATGS STSPLLMQGP RWQGEALQDQ TLLVFHEQGL
GDTIQFIRFL PRIADRVGHV VFVCQPQLYR LLNLSELFAT PSITLLPDGA DLPAYAAWAP
LLSLPGLINL VPEATGQRVP YLTLEKQLFE RWRDWLGGLS PSQEQEQEKE KTRFRIGLSW
QGNPKAYGEP GRSLPLELFQ PLAEFSDEID IISLQKGVGA DQQAPEGLAL HPVPGLDDGP
DAFVDTAALM ASLDLVITSD TALAHLAGAL GRPVWLLLKK APDWRWGMDG ILTDWYPTMR
LFRQMEAGQW QPVLQDVAHE LKVLLFAGRA TDDAPDEAAD GLNEAIKRHQ GRDYGRAVQL
YRHVLTQDFQ RERVLNLLGM ACLEAGERSS VAGRQAIPFC ARAVAIRPSL GDHWSNFAIA
LDAAGLVTDG MRALRHGLLY DTGHAACLLA LARRETSVGD AETAFRRAGE VLKAQPRSGH
ALSVYAAAAL ALGRFNVAEE ALRRACRIEP ELASHHVQLG AVLLKAKQPQ AAARAWEKAL
TLDPGNADAW SNLGVAERNH GYADLACWIQ RQGALAKPGH AESWSNLGIS LMDTGREDEA
ILAFGKAIEA RPGYADAEMA LGMCLLNEGD YARGLPLYER RFLVEILGID RTRVRLPVWQ
GEDLAGKSIL VLAEQGFGDA FQFVRYVALL KEKGAAKVMI GCRRKIATLL QTVPGVDGVV
CESDPVPPLD YHVFMMSLPL LCGTVVETIP AFPAYLFADP LRVRRWAGWL SAKPGFRVGL
VWQGNPDPQV DKGRSFPLQV LAPLAAIDGV RLIALQKGAG EEQLDMVDFV VERPPEEFDS
GADAFADTAA MIMNLDLVIT SDTAVAHLAG ALGRPTWVIL KSHAEWRWLR GRSDSPWYPT
SRVFRRVADE VEAEPFAGVV SRVADALGRL VEGDRAQLFE AAEPVVAVPA QPGPQQRLAA
AIRTHMAGNV TAAEATYAAL LHEDETRAEA LHMLGGLAVE RLHYHRGYVL LRGAAALGLA
TPTFQTNYAI ALRHVGKQDE AEACLRQSLE TSPSAEAYMT LGNLLRDTDR YGQALEAYRA
SIQLRPDLSK AHRGLGNALR EMGRVEEAIA SLDRALDLLP GDVETLIDRA HAHLMAGNLP
QGFRDYETRW QGAEMVARSL PMPRWTGEAL PDKVLLIHGE QGLGDQIQFA RFVRQAALKV
GHVILELREP LISLFSTLVV ERRNITLRRQ GVDAIDDADV EAPIMSLPLI FATTLETLPG
PANFRPDPRR VADWEARFAH RDALRVGLVW QGNPVARADK GRSPPLKVLE PLFAVEGAHF
ISLQFKDGLE QMAGLEFAKA MQVPGSDLGD FGETAAAIAA LDLVISSCTS TLHLAASLGV
PCFALLKYGA DWRWMTGRDD SPWYPGLKLF RQPQPGDWAS VAKAVAEDLK RLVERKP
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