| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3865 |
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| Symbol | |
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| ID | 7388548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3214167 |
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| End bp | 3215678 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652615 |
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| Product | TPR repeat protein |
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| Protein accession | YP_002550796 |
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| Protein GI | 222149839 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAACC AAACTGCGTC GGGCGAAAGG CTGATCCAGG CCTTTCAGCT GCACAAGGCT
GGGATGCTGG ACGAGGCGAT TGCCCATTAC CGTGCCATTC TCGAGGAAGA GCCCGACCAG
GTCGATGCGC TCAGACTGCT GGCCTCGGCG GAGCGCTCGC GTGGCGATCT GGCGCAATCA
CTGTCGCTTT ATGCCAGGGC GCTCAGACTT GCGCCTGAGG AAAGTGATAT CTGGTACAAT
CTCGGCAATG CGCTGGGTGA GGCCGGTCGC AAGCCGGATG CGCTGGAAGC CTATCAAAGG
GCCGCGCAAT TGGCACCTGA CAATGCCGCC TGTCACGCCA ATATCGGCGT AACGCACGCT
GATCTCGATG ATTATCCGGC AGCGATTACC GCTTATCGGC AAGCGCTGGC ACTCGATCCG
CAAAACCGCA TAGCGCTCCA CAATCTCGGC AATGCGCTGT CCGAATTGGG CGAGGCGGAA
GCGGCGATGG CGCTGCTGTC CAAGGCGCTG GAAATCTATC CCACCTCCGC TGAGGCTCAT
TATAACCTTG GCCTCAACCT GCTGCGGCTT TTCGATTATA CCACTGGTTT TGCCGAGTAC
GAATGGCGCT GGCAGGCCGA AGGCTTTCCG GGAGAGGCAC GTCACACGGA TATTGCCGAT
TGGAACGGGC GGCCTTTTCA AGGCAAACGC CTGTTGGTTC ATGCGGAACA GGGGCTTGGC
GACACGATCC AGTTCGTCAA GCTGCTACCC CTGGTCAAAT CGCTTGGCGG CGAGGTGATC
CTGCAAGTGC CAAACAAGCT GGTCGGGCTG CTGGCGGATG TGCCGGGGGC AGATCGGGTA
CAGGCAGAGA ACCCGCCAGC AGGGACCATC GATTTTCAGG TGCCGTTGCT TGGTCTGCCG
CATCGGCTGA AATTGACGCT GGGCAGTGTG CCGAAAGCCC GTGCCTATTT GCAGCCACAG
GCGGAGCGGG TTTCGCTGTG GCGTGAACGG CTTGATTTGA AACAAGGCGA GAAAGCCCTG
GGTTTTGTCT GGCGCGGCAA TCCCCTGTCA CCAGCGGAAA AAGGCCGCAG TCTTGCCGGT
CCCGAACAGC TGTCGCCCTT TGCGAACCTT GGCGGCACGC GGCTGATTGC CCTGCAAAAG
CTTGATGAGG CGGCGTTGGA ACCCGCCGAT ACCCCGTCAG GCTATAAAGT GGCGGGCCTG
TCCTTCACGC TGGAACATCC AGGCCCGGAC TTCGATGCCG GAGCGGATGC CTTTCTCGAC
ACGGCTGCCA TCCTCACCCA GCTTTCGGCC TTCATTTCGG TCTGCACCGC GCCTTTGCAT
CTGGCCGGTA GCCTTGGCGT ACCGACCATC GGCCTTTTGA AGAAAGTGCC GGATTGGCGC
TGGGGTTCTG AGGGCGCCAC CACGCCCTGG TATCCGTCGA TGCAGCTTTG CCGCCAAACC
GAGGCGGGGA ATTTTACCGC CTCGATTGCC CAGGCGGTGT CACTTGCTGA AGCGATTACT
GATAGGTCCT GA
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| Protein sequence | MTNQTASGER LIQAFQLHKA GMLDEAIAHY RAILEEEPDQ VDALRLLASA ERSRGDLAQS
LSLYARALRL APEESDIWYN LGNALGEAGR KPDALEAYQR AAQLAPDNAA CHANIGVTHA
DLDDYPAAIT AYRQALALDP QNRIALHNLG NALSELGEAE AAMALLSKAL EIYPTSAEAH
YNLGLNLLRL FDYTTGFAEY EWRWQAEGFP GEARHTDIAD WNGRPFQGKR LLVHAEQGLG
DTIQFVKLLP LVKSLGGEVI LQVPNKLVGL LADVPGADRV QAENPPAGTI DFQVPLLGLP
HRLKLTLGSV PKARAYLQPQ AERVSLWRER LDLKQGEKAL GFVWRGNPLS PAEKGRSLAG
PEQLSPFANL GGTRLIALQK LDEAALEPAD TPSGYKVAGL SFTLEHPGPD FDAGADAFLD
TAAILTQLSA FISVCTAPLH LAGSLGVPTI GLLKKVPDWR WGSEGATTPW YPSMQLCRQT
EAGNFTASIA QAVSLAEAIT DRS
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