| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3860 |
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| Symbol | |
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| ID | 7388543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3205860 |
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| End bp | 3207620 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652610 |
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| Product | transporter |
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| Protein accession | YP_002550791 |
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| Protein GI | 222149834 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.102256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGACTC AACAGATTTT GGCTTTCTCC GTCATCGGCC TGATGATGGT TGCCTTCATG
TGGGACCGTA TCCGCTACGA TGTGGTGGCG GGGCTGACCC TTCTGGCGGC CGTTGCTCTT
GGCCTTGTGC CAGCCGATAA GGCTTTTTCC GGGTTCAGTG ACGATATCGT TATCATCGTC
GGCAGTGCCC TGGTGGTCAG CGCCGGGGTG GCGCGGTCCG GTCTGGTCGA TGCCGCCATT
AAACGATTCT TCCCCAACCT GACATCAATG CGCGCCCAGA TCCTGCTTCT GGTGCTGACG
GTGACAGTGC TGTCGGCCTT CATCAAGAAT ATCGGCGCAT TGGCCATCAT GATGCCGGTC
GCGTTCCAGT TCTCGAAGAA GTCAGGGACG CCGGTCTCCG CCTTCCTGAT GCCGATGGCA
TTCGGTGCGC TTCTGGGCGG GTTGATGACC CAGATCGGCA CCTCACCCAA TATTGTCGTG
TCCAAGCTGC GAGGCGAACT GACCGGCACG CCTTTCACCA TGTTCGATTT CACCCCTGTC
GGCGCGATCC TGGCCGTTGC CGGGGTGATT TTCCTGATGC TGTTCTATTG GCTGGTGCCC
AAGCGCCAAA ACCAGAACCC GACTTTGCAG GAAGCACTCG GCAATTCCAA TTTCTCCACC
GAGGCGACCC TGCCCGAAGG TTCCGCACTA TCAGGCAAAC CGCTGCGCGA TCTGTTGAAA
ACTACCGCCG GCGAAGTGAT CGCCACCGCC ATCCTGCGCG GCCACAGCCG TATTTCGCCT
TTCCCGGATA TGGTGTTGAA AGAGCAGGAC ACATTGCTGC TGGAGGGACC ATCCGATGCG
CTTGACCGGC TGGTCAGCCA ATCCGGTTTA AAACTGTCGG GCCGGGAGAT CGGTTCGGGC
GGTGAAATCA CCGCCATCGA GGCGGTGGTC GGGCCGGGAT CGCCGCTGGA AGGCCTGACG
GCCCGCGATG TTTCATTGTT CAACACGTAT GGCATCAACC TCCTGGCCGT CAGCCGCCGC
GGCAAGCGGC TGAAGGAGCG GCTGGCGCAT GTGGCCTTGC GCGCTGGCGA TGTCGTCGTG
CTCCAGGGGC GACGCACCGC GCTGCCAGCC GCGTTGCAGA CCCTGGATTG CCTGCCGCTG
GCCGAGCGCG AAATCCTGCT CGGCACCAGC CGCAGCGCGC TTATCCCGGT GCTGATCCTG
ATTGCCGCGA TGGGATCAAC CGCAGTCGGT CTGGCACCGG TGCCGGTTGC CTTCTTTGCC
GCTGCCCTGG CGATGGTGGT GTTCCGGGTC ATCCCGCTCA ACGATTTCTA TCAGGCTGTC
GATGGTCCGA TCCTCGTCAT GCTGGCGGCA CTGATCCCGG TCAGCGATAC CCTGCGCAGT
ACGGGTGGAA CCGATGTCAT TGCCGGTTGG CTTGGCCATG TTGCCCATGG GCTGCCGCCT
TACGGTGCGC TGGCGCTGAT TCTGGTGACT GCCATGGCGG TGACACCGTT TCTCAACAAT
GCGGCGACGG TTCTGGTCAT GGCACCGATT GCCGCCAGCT TTGCCCATAA TCTTGGCTTC
CGGCCCGACG CCTTTCTGAT GGCGGTGGCA ATTGGCGCCG GGTGTGATTT CCTGACCCCG
ATCGGTCATC AATGCAACAC GTTGGTGATG GGGCCGGGCG GCTATAAATT CAGTGATTAT
CCACGCCTTG GCCTGCCGCT GTCGCTGTTG ATCATTCTCG TTGCTATCCC GGCACTGATC
GTGGTCTGGC CATTGAAATA G
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| Protein sequence | MTTQQILAFS VIGLMMVAFM WDRIRYDVVA GLTLLAAVAL GLVPADKAFS GFSDDIVIIV
GSALVVSAGV ARSGLVDAAI KRFFPNLTSM RAQILLLVLT VTVLSAFIKN IGALAIMMPV
AFQFSKKSGT PVSAFLMPMA FGALLGGLMT QIGTSPNIVV SKLRGELTGT PFTMFDFTPV
GAILAVAGVI FLMLFYWLVP KRQNQNPTLQ EALGNSNFST EATLPEGSAL SGKPLRDLLK
TTAGEVIATA ILRGHSRISP FPDMVLKEQD TLLLEGPSDA LDRLVSQSGL KLSGREIGSG
GEITAIEAVV GPGSPLEGLT ARDVSLFNTY GINLLAVSRR GKRLKERLAH VALRAGDVVV
LQGRRTALPA ALQTLDCLPL AEREILLGTS RSALIPVLIL IAAMGSTAVG LAPVPVAFFA
AALAMVVFRV IPLNDFYQAV DGPILVMLAA LIPVSDTLRS TGGTDVIAGW LGHVAHGLPP
YGALALILVT AMAVTPFLNN AATVLVMAPI AASFAHNLGF RPDAFLMAVA IGAGCDFLTP
IGHQCNTLVM GPGGYKFSDY PRLGLPLSLL IILVAIPALI VVWPLK
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