| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3856 |
|---|
| Symbol | lysS |
|---|
| ID | 7388541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3202419 |
|---|
| End bp | 3203915 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643652608 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_002550789 |
|---|
| Protein GI | 222149832 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAG CAAACACCGA AACCGCCCTT TCCTCCGACG CCACCGAGGT GCGCCGCCAG
AAACTGGCGC TGCTGCGCCA GCAGATCGGC GATGTCTATC CAGCTCACTT CCACCGCACC
GCCACCACGG CTGAACTGGC CGAAAAATAT GCGGAGCTGG AGCCGGACAC GGAATCGGGC
GATACGGTTA CGGTTGCAGG CCGCATTTAT TCCTCGCGCA ATTCCGGCAT GTTCATGGAC
CTGCGCGATG CCTCGGGCAA AATCCAGATC TTCAGCCACA AGGATATGAC CCCGGAAGAA
GCGCGCGCCA TGCTGCCGAT GATCGATCTG GGCGATATTG TTGGCGTTAC CGGTCCGGTT
CGCCGCACCA AGCGCGGTGA GCTGACCATC AACGCCGAAA CCATCACCAT GCTGACCAAG
ACGCTTCTGC CGATGCCGGA GAAATATCAC GGCGTGACGG ATATCGAAGT GCGCTATCGC
AAGCGCCATC TCGACATTCT CACCAATGAC GAATCCAAGC TGCGCTTCCA GCAGCGCTCG
AAGATCGTTT CCGGCATCCG CCGTTTCATG GAAAGCGATG GCTTCATGGA GGTGGAAACC
CCCATGCTGC AATCCGTCTA TGGCGGAGCG TCTGCCGATC CGTTCAAGAC CCATCACAAC
ACGCTGAAGC AGGACATGTA TCTGCGCATT GCGCCAGAAC TGTTCCTCAA GCGCACGCTG
GTCTCTGGTC TTGCCGACAA GATTTTCGAA ATCAACCGCA ACTTCCGCAA TGAAGGCGTG
TCCACCCGGC ACAATCCTGA ATTCACCATG ATGGAATGCT ACTGGGCCTA TGCCGACTAC
GAAGACGTGA TGGATCTGGT CGAGCGCCTG TTTGCCGACC TCGCCATGCG CATTCATGGC
TCGACCGAAT TTGCCTTTGG CGACAAGGAA ATCTCCTTCA AAGGTCCGTT CAAGCGCGTG
CCTATGCCGG ATGCCGTCAA GGAGGTCACG GGCATCGACT TCCTGGCCAT CAAGACCGAT
GAAGAAGCCC GCGCGGCGGC CAAGGCTGCC GGGTTTGCGG TCGAGAAGGA TTGGACCTGG
GGCGAATGTC TGTCCTTCAT CTTTGAAGAA AAGGTCGAGG GCACGCTGAT CCAGCCAAGC
CATGTGACGC ATTTCCCCAA GGACATTTCG CCGTTTGCCA AGGAAGTGCC CGGCGAGCCG
CGTCTGGTCG AACGGTTTGA GACCTATTGC AACGCCTGGG AAATCGGCAA TGCGTTTTCC
GAGCTGAACG ATCCGGAAGA ACAGCGCAAG CGCATGGTCG AGCAGCTCGA ACAGGCCCAT
GCCCGTGGCG AAAAGGACAA GCAGTTGGAC GACGAATTTC TCGACGCCAT CGACCAGGGC
ATGCCGCCAG CCGGTGGACT TGGCATTGGC GTCGATCGCC TGATCATGCT GCTGACCAAT
GCGCCGTCGA TCCGAGACAT CATTCTGTTC CCGGCGCGGC GCGCCAAGGT CGATTGA
|
|---|
| Protein sequence | MTEANTETAL SSDATEVRRQ KLALLRQQIG DVYPAHFHRT ATTAELAEKY AELEPDTESG
DTVTVAGRIY SSRNSGMFMD LRDASGKIQI FSHKDMTPEE ARAMLPMIDL GDIVGVTGPV
RRTKRGELTI NAETITMLTK TLLPMPEKYH GVTDIEVRYR KRHLDILTND ESKLRFQQRS
KIVSGIRRFM ESDGFMEVET PMLQSVYGGA SADPFKTHHN TLKQDMYLRI APELFLKRTL
VSGLADKIFE INRNFRNEGV STRHNPEFTM MECYWAYADY EDVMDLVERL FADLAMRIHG
STEFAFGDKE ISFKGPFKRV PMPDAVKEVT GIDFLAIKTD EEARAAAKAA GFAVEKDWTW
GECLSFIFEE KVEGTLIQPS HVTHFPKDIS PFAKEVPGEP RLVERFETYC NAWEIGNAFS
ELNDPEEQRK RMVEQLEQAH ARGEKDKQLD DEFLDAIDQG MPPAGGLGIG VDRLIMLLTN
APSIRDIILF PARRAKVD
|
|---|
| |