Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3838 |
Symbol | |
ID | 7388528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3190215 |
End bp | 3190907 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643652595 |
Product | transcriptional regulator TetR family |
Protein accession | YP_002550776 |
Protein GI | 222149819 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.606304 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGTCG TCGACGATGA AAAACCCGCC CAGGCCGCTT CAGGACGTTT CGCCGCAGGT GAAGATCCGG CCAAGCGCGA CCAGATCCTG GATGGCGCCA AACGCGCCTT CATGAAGCAT GGCTTCGATG CGGCCAGCAT GAACGATGTC ACCCGGGAAG CCGGCGTGTC CAAGGGGACC ATCTATGTCT ATTTCCAGAG CAAGGAAGAT CTGTTTGCCG CGCTGATCAA CAACCAGAAG CAGAAATTTG CGGCCTCAAT GCGCGATATC CTGGCGGAAG AGACCGATCT GCATATGGCG CTGCGCCGCT ATGCCCTGGC TTTTACCAAT TATATTCTCA CCAGCGAAAT GATCCCTGCC ATGCGCATGC TGCTGGCGGT TCAGGATCGC ATGCCGCACC TCTGTCAAAG CTTCATGCGG TCGGGACCGG AAAACGTCCG CACGGTTCTC GAGGACTATC TGGAGGTCCA GGTGAAGGCC GGACGTCTCG ACATAGCCGA TACCGAGCTT GCCGCCCGCC AGTACATCGA GCTGGCAACA GGCGCCTATT TCAAGAAGCG ACTGTTCGGT GAAATCGAAG TGCCGCCGCC GCAGGCGGAA ATTGACTACA TCATCGATAA CGCCCTGCAT ATTTTCCTGC TCGCCTATGA TCGCAAGGCC GAAAACGGCC CTGAGGCGCA ACGGGCGAAC TGA
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Protein sequence | MTVVDDEKPA QAASGRFAAG EDPAKRDQIL DGAKRAFMKH GFDAASMNDV TREAGVSKGT IYVYFQSKED LFAALINNQK QKFAASMRDI LAEETDLHMA LRRYALAFTN YILTSEMIPA MRMLLAVQDR MPHLCQSFMR SGPENVRTVL EDYLEVQVKA GRLDIADTEL AARQYIELAT GAYFKKRLFG EIEVPPPQAE IDYIIDNALH IFLLAYDRKA ENGPEAQRAN
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