Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3836 |
Symbol | emrB |
ID | 7388526 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3187174 |
End bp | 3188751 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643652593 |
Product | MFS permease |
Protein accession | YP_002550774 |
Protein GI | 222149817 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.29674 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGACA ATGCAAGCAC GGCCGGACCG GATGCGGTTG CGCAAATGCC AAGCCGGCGC GACGTCATCG GCTTTCTGGC GATGGTATTC GGCATGTTCA TGGCGATCCT CGACATTCAG ATCGTCTCGG CCTCGCTTTC CGAAATCCAG GCTGGCCTCG GGGCCGGTTC CGAAGAAGTA TCCTGGGTGC AGACCTCTTA TCTGATTGCG GAAGTGATTA TGATCCCGCT ATCGGGGATG CTGGCACGGA TCGTGTCGAC ACGGGTGCTG TTTTCCTGTG CTGCGGCTGG CTTTACCATT GCCAGCGCCA TGGCGGCGAC CGCCACCAAT ATCGAGCAGA TGATCATCTA CCGCGCTATC CAGGGCTTCA TCGGTGGCGG CATGATTCCC TCGGTTTTTG CCGCGGCGTT TACGATTTTT CCGCCTTCCA AGCGCAGTAT TGTTTCGCCG ATCATCGGCC TTGTCGCAAC GCTTGCGCCA ACCATCGGCC CGACGGTTGG CGGCTATATC AGCCATGCCA TGTCCTGGCA CTGGCTGTTC CTGATCAACA TCTTTCCCGG CATTATCGTA ACGCTCGTGG TCTGGACATT CGTGGACTTT GACAAGCCCG ACAGATCGCT TCTGGCGAAA TTCGACTGGT GGGGCCTGTT TTCCATGGCG CTGTTCCTGG GCGCGATGGA ATATGTTCTC GAAGAGGGCA ATAACAAGGA CTGGTTTAAC GACGAGCGCA TTGTTTGGGG CGCCCTGCTG ATGACCTTGG GTGGGGTGGT GTTCTTCTAC CGTGCCTTCA CCTGCGAGCA ACCCGTGGTC GATCTCAGGG CCTTTTCCAA TCGAAATTTT GCCTTTGGAT CGCTGTTTTC CTTCGTCATG GGCATGGGCC TCTATGGTTT GACCTATCTC TATCCGCTCT ATCTGTCGCG GGTACGCGGC TATGACAGTC TGATGATCGG TGAAACAATG TTTGTTTCCG GTCTTGCCAT GTTCCTGACC GCGCCACTTG CCGGCATATT GTCGACGAAA ATGGACCCGC GGTTGATGAT GGCGTGTGGC TTTACCAGCT TTGCGCTTGG CACCTATATG GTAACCGGCA TGACCGCTGA TTGGGATTTT TATGACTTGC TGTTGCCGCA GATCCTGCGT GGCTGCTCGT TGATGACCTG CATGGTGCCT ATCAACAATA TTGCCCTTGG AACTTTGCCG CCTGAGCGGA TCAAAAACGC CTCCGGTCTT TACAATCTCA CACGAAATCT CGGCGGTGCC GTAGGGCTGG CGATTATCAA CACATTGCTG ACCCGGCGCA CCGATGAGCA TTACGGTCGC CTGGTGGAAC ATATAAACTG GAGCAAGCCG GCGGCGATGA GCTGGATTGA TACAGTCTCG GCCAATTACG CATTTTACGG CCTCGATGGT GAAAATGCGG CCTTTAAAAA GCTGTCCAGC ATGATCAACC AGCAGGCATG GATCATGGCG TTTATGGATG TATTTTTAGG GATCACAATC TTGTTTATTG CACTGACGGC ACTTTCAACG ATGATTAAAA AACCTGAAGG TGCCGTGCCC GCCGATGCGG CGCACTAA
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Protein sequence | MTDNASTAGP DAVAQMPSRR DVIGFLAMVF GMFMAILDIQ IVSASLSEIQ AGLGAGSEEV SWVQTSYLIA EVIMIPLSGM LARIVSTRVL FSCAAAGFTI ASAMAATATN IEQMIIYRAI QGFIGGGMIP SVFAAAFTIF PPSKRSIVSP IIGLVATLAP TIGPTVGGYI SHAMSWHWLF LINIFPGIIV TLVVWTFVDF DKPDRSLLAK FDWWGLFSMA LFLGAMEYVL EEGNNKDWFN DERIVWGALL MTLGGVVFFY RAFTCEQPVV DLRAFSNRNF AFGSLFSFVM GMGLYGLTYL YPLYLSRVRG YDSLMIGETM FVSGLAMFLT APLAGILSTK MDPRLMMACG FTSFALGTYM VTGMTADWDF YDLLLPQILR GCSLMTCMVP INNIALGTLP PERIKNASGL YNLTRNLGGA VGLAIINTLL TRRTDEHYGR LVEHINWSKP AAMSWIDTVS ANYAFYGLDG ENAAFKKLSS MINQQAWIMA FMDVFLGITI LFIALTALST MIKKPEGAVP ADAAH
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