Gene Avi_3836 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3836 
SymbolemrB 
ID7388526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp3187174 
End bp3188751 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content54% 
IMG OID643652593 
ProductMFS permease 
Protein accessionYP_002550774 
Protein GI222149817 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.29674 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGACA ATGCAAGCAC GGCCGGACCG GATGCGGTTG CGCAAATGCC AAGCCGGCGC 
GACGTCATCG GCTTTCTGGC GATGGTATTC GGCATGTTCA TGGCGATCCT CGACATTCAG
ATCGTCTCGG CCTCGCTTTC CGAAATCCAG GCTGGCCTCG GGGCCGGTTC CGAAGAAGTA
TCCTGGGTGC AGACCTCTTA TCTGATTGCG GAAGTGATTA TGATCCCGCT ATCGGGGATG
CTGGCACGGA TCGTGTCGAC ACGGGTGCTG TTTTCCTGTG CTGCGGCTGG CTTTACCATT
GCCAGCGCCA TGGCGGCGAC CGCCACCAAT ATCGAGCAGA TGATCATCTA CCGCGCTATC
CAGGGCTTCA TCGGTGGCGG CATGATTCCC TCGGTTTTTG CCGCGGCGTT TACGATTTTT
CCGCCTTCCA AGCGCAGTAT TGTTTCGCCG ATCATCGGCC TTGTCGCAAC GCTTGCGCCA
ACCATCGGCC CGACGGTTGG CGGCTATATC AGCCATGCCA TGTCCTGGCA CTGGCTGTTC
CTGATCAACA TCTTTCCCGG CATTATCGTA ACGCTCGTGG TCTGGACATT CGTGGACTTT
GACAAGCCCG ACAGATCGCT TCTGGCGAAA TTCGACTGGT GGGGCCTGTT TTCCATGGCG
CTGTTCCTGG GCGCGATGGA ATATGTTCTC GAAGAGGGCA ATAACAAGGA CTGGTTTAAC
GACGAGCGCA TTGTTTGGGG CGCCCTGCTG ATGACCTTGG GTGGGGTGGT GTTCTTCTAC
CGTGCCTTCA CCTGCGAGCA ACCCGTGGTC GATCTCAGGG CCTTTTCCAA TCGAAATTTT
GCCTTTGGAT CGCTGTTTTC CTTCGTCATG GGCATGGGCC TCTATGGTTT GACCTATCTC
TATCCGCTCT ATCTGTCGCG GGTACGCGGC TATGACAGTC TGATGATCGG TGAAACAATG
TTTGTTTCCG GTCTTGCCAT GTTCCTGACC GCGCCACTTG CCGGCATATT GTCGACGAAA
ATGGACCCGC GGTTGATGAT GGCGTGTGGC TTTACCAGCT TTGCGCTTGG CACCTATATG
GTAACCGGCA TGACCGCTGA TTGGGATTTT TATGACTTGC TGTTGCCGCA GATCCTGCGT
GGCTGCTCGT TGATGACCTG CATGGTGCCT ATCAACAATA TTGCCCTTGG AACTTTGCCG
CCTGAGCGGA TCAAAAACGC CTCCGGTCTT TACAATCTCA CACGAAATCT CGGCGGTGCC
GTAGGGCTGG CGATTATCAA CACATTGCTG ACCCGGCGCA CCGATGAGCA TTACGGTCGC
CTGGTGGAAC ATATAAACTG GAGCAAGCCG GCGGCGATGA GCTGGATTGA TACAGTCTCG
GCCAATTACG CATTTTACGG CCTCGATGGT GAAAATGCGG CCTTTAAAAA GCTGTCCAGC
ATGATCAACC AGCAGGCATG GATCATGGCG TTTATGGATG TATTTTTAGG GATCACAATC
TTGTTTATTG CACTGACGGC ACTTTCAACG ATGATTAAAA AACCTGAAGG TGCCGTGCCC
GCCGATGCGG CGCACTAA
 
Protein sequence
MTDNASTAGP DAVAQMPSRR DVIGFLAMVF GMFMAILDIQ IVSASLSEIQ AGLGAGSEEV 
SWVQTSYLIA EVIMIPLSGM LARIVSTRVL FSCAAAGFTI ASAMAATATN IEQMIIYRAI
QGFIGGGMIP SVFAAAFTIF PPSKRSIVSP IIGLVATLAP TIGPTVGGYI SHAMSWHWLF
LINIFPGIIV TLVVWTFVDF DKPDRSLLAK FDWWGLFSMA LFLGAMEYVL EEGNNKDWFN
DERIVWGALL MTLGGVVFFY RAFTCEQPVV DLRAFSNRNF AFGSLFSFVM GMGLYGLTYL
YPLYLSRVRG YDSLMIGETM FVSGLAMFLT APLAGILSTK MDPRLMMACG FTSFALGTYM
VTGMTADWDF YDLLLPQILR GCSLMTCMVP INNIALGTLP PERIKNASGL YNLTRNLGGA
VGLAIINTLL TRRTDEHYGR LVEHINWSKP AAMSWIDTVS ANYAFYGLDG ENAAFKKLSS
MINQQAWIMA FMDVFLGITI LFIALTALST MIKKPEGAVP ADAAH