| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3808 |
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| Symbol | ptxR |
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| ID | 7388257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3167282 |
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| End bp | 3168211 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652572 |
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| Product | transcriptional regulator LysR family |
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| Protein accession | YP_002550753 |
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| Protein GI | 222149796 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGACACCC TGACCCGCAT CCGCGCTTTC ATCGATGTCG TTGAAGCGGA AGGCTTTTCC
GCCGCCGCCC GCAAGACCGG GCGCTCCAAG GCGCTGCTGT CGAAATATGT TCGCGAGCTG
GAGGACGAAT TGGGGGCATT GCTTCTCAAT CGCACCACAC GGCAGTTTTC CATGACCGAG
GCGGGTCACA CCTATTATCG CAGCGCCGCC GACATCCTGA AAGAGATCGA CAATCTCGCC
GATCTGGTGC GCGAGAACAA TGTCGGCATC AGCGGCAAGA TTCGCATCAC CGTGCCGCGC
AGCTTCACCG ATGCCGAAGT CGGTCAATCG CTGATCGATT TTGCCCTGCA ACACCCCGAT
CTTTCCATCG AGATCGTTGC CGAAGACCGG TTCGTCGACT TGATCGAGGA AGGCTTCGAC
TTAGCCATCC GCGTCACCAA ACTGGAAGAT TCGGGGATGA TCGCCCGCAA GCTGGCGGAT
TTCAGAAGTT ACGCCTGCGC CAGCCCGGTT TTTCTGGAGA AATATGGTCC CCTCACCCAT
CCGCAGGATC TGTCCAAGGT GCCGGTGCTG ATCGACACCA ATACGCGCGG ACACAACAGC
CTGCGCCTGC GCCAGCCGGA TGGCGAGGCC TTTACCGTGA ATATTTCCGG GCCGCTGGAG
GTCAATAGCC CCCAGACCAC GTTGCGCGGC GCGCTATCGG GCCTTGGCAT CGCCCTCTTG
CCGGATTTCG TCGCCCGCAG ACATATCGAA AGCGGCGCAC TGATTTCGAT ATTTGAGGAT
TACATGCCCT CCGGCAGCGG GATCTATGCG GTCTACCCGC ATCGCCGTTA TCTGCCCGCC
AAGGTCCGCG CGCTCGTGGA TTTCATGCAC AATTGGTTCA AGCGCAATGG CACATGCCAG
CCCAAGCAAG GAACGCCACC TTCGGAGTGA
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| Protein sequence | MDTLTRIRAF IDVVEAEGFS AAARKTGRSK ALLSKYVREL EDELGALLLN RTTRQFSMTE
AGHTYYRSAA DILKEIDNLA DLVRENNVGI SGKIRITVPR SFTDAEVGQS LIDFALQHPD
LSIEIVAEDR FVDLIEEGFD LAIRVTKLED SGMIARKLAD FRSYACASPV FLEKYGPLTH
PQDLSKVPVL IDTNTRGHNS LRLRQPDGEA FTVNISGPLE VNSPQTTLRG ALSGLGIALL
PDFVARRHIE SGALISIFED YMPSGSGIYA VYPHRRYLPA KVRALVDFMH NWFKRNGTCQ
PKQGTPPSE
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